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Figure legends
Figure 1. Phosphorylation of TSC2 (T1462) and mTORC1 signaling in islets of GCN2deficient mice.
Quantitative data and representative blots from immunoblot analysis of phosphorylated
(T1462) and total TSC2 (A) and mTORC1 signaling (B, C, and D) in islets of HFD-fed wildtype mice (GCN2+/+) or HFD-fed GCN2-deficient mice (GCN2−/−). Data are presented as
means ± SEM of four independent populations from each group. *P < 0.05, **P < 0.01.
Figure 2. Search for molecules binding to 14-3-3 downstream of GCN2 signal.
(A) Hypothesis concerning the mTORC1 regulatory mechanism in pancreatic β-cells from
GCN2-deficient mice and mechanism of the pull-down assay by HaloTag. (B) Quantitative
data and representative blots in immunoblot analysis of phosphorylated (T1462) and total
TSC2 using INS-1 cells in different situations, as described below. (C) Pull-down assay of
molecules binding to 14-3-3 protein using INS-1 cells in three different situations. NC,
normal condition; AD, amino acid–deficient condition; GDAD, GCN2-deficient condition
with amino acid deficiency.
Figure 3. Quantification of candidate molecules for binding to 14-3-3 in cells and islets.
Quantitative real-time PCR analysis of each of the molecules shown in INS-1 cells under
amino acid deprivation (A), in glucose-stimulated INS-1 cells (B), in islets of HFD-fed wildtype mice (C), and in islets of HFD-fed GCN2-deficient mice (D). Quantitative real-time
PCR analysis of L-asparaginase mRNA expression in various organs (E), GCN2-knockdown
INS-1 cells (GCN2-KD) (F), and ATF4-knockdown INS-1 cells (ATF4-KD) (G) or INS-1
cells transfected with scrambled siRNA (Control). Data are presented as means ± SEM of
four independent populations from each group. *P < 0.05, **P < 0.01.
Figure 4. Analysis of mTORC1 activity in L-asparaginase-knockdown INS-1 cells.
(A) Quantitative real-time PCR analysis of L-asparaginase mRNA expression in Lasparaginase-knockdown INS-1 cells (Asparaginase-KD) or INS-1 cells transfected with
scrambled siRNA (Control). Quantitative data and representative blots in immunoblot
analysis of mTORC1 signaling (B, C, and D) in L-asparaginase-knockdown INS-1 cells
(Asparaginase-KD) or INS-1 cells transfected with scrambled siRNA (Control). (E) A model
for the regulation of mTORC1 activity by GCN2-mediated TSC2-dependent and independent pathways in pancreatic islets. Data are presented as means ± SEM of four
independent populations from each group. *P < 0.05, **P < 0.01.
Table 1. Molecules binding to 14-3-3 in INS-1 cells detected by pull-down assay under normal, amino acid–deficient, and GCN2deficient conditions under amino acid deficiency.
Normal condition
Sample #
10
11
12
13
SPROT ID
MYH7_RAT
H4_RAT
PNMA1_RAT
MYH7_RAT
PSMD1_RAT
MYH7_RAT
MYH4_RAT
PSMD1_RAT
MYPC_RAT
CLH1_RAT
PNMA1_RAT
PSMD1_RAT
PSMD1_RAT
PSMD1_RAT
GRM8_RAT
PNMA1_RAT
ATPA_RAT
PHRF1_RAT
TBB2A_RAT
TTL_RAT
TBA1A_RAT
Protein name
Myosin-7
Histone H4
Paraneoplastic antigen Ma1 homolog
Myosin-7
26S proteasome non-ATPase regulatory subunit 1
Myosin-7
Myosin-4
26S proteasome non-ATPase regulatory subunit 1
Myosin-binding protein C, cardiac-type
Clathrin heavy chain 1
Paraneoplastic antigen Ma1 homolog
26S proteasome non-ATPase regulatory subunit 1
no significant hit
26S proteasome non-ATPase regulatory subunit 1
no significant hit
26S proteasome non-ATPase regulatory subunit 1
Metabotropic glutamate receptor 8
Paraneoplastic antigen Ma1 homolog
no significant hit
ATP synthase subunit alpha, mitochondrial
PHD and RING finger domain-containing protein 1
Tubulin beta-2A chain
Tubulin--tyrosine ligase
Tubulin alpha-1A chain
14
15
16
17
18
19
20
21
22
23
24
EF1A1_RAT
PSMD1_RAT
PSMD1_RAT
G3P_RAT
1433E_RAT
PSMD1_RAT
PSMD1_RAT
PSMD1_RAT
H2A1_RAT
PSMD1_RAT
H4_RAT
PSMD1_RAT
PSMD1_RAT
Elongation factor 1-alpha 1
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 1
Glyceraldehyde-3-phosphate dehydrogenase
14-3-3 protein epsilon
26S proteasome non-ATPase regulatory subunit 1
no significant hit
no significant hit
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 1
Histone H2A type 1
26S proteasome non-ATPase regulatory subunit 1
Histone H4
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 1
SPROT ID, Swiss-Prot ID; MW, Molecular Weight
Amino acid-deficient condition
Sample #
SPROT ID
MYH6_RAT
MYH7_RAT
PSMD1_RAT
MYH7_RAT
PSMD1_RAT
MYH7_RAT
PSMD1_RAT
PSMD1_RAT
ASPG_RAT
PSMD1_RAT
H14_RAT
Protein name
Myosin-6
Myosin-7
26S proteasome non-ATPase regulatory subunit 1
Myosin-7
26S proteasome non-ATPase regulatory subunit 1
Myosin-7
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 1
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
26S proteasome non-ATPase regulatory subunit 1
no significant hit
Histone H1.4
10
11
12
13
14
15
16
17
18
19
20
21
22
23
HS90B_RAT
PSMD1_RAT
SI1L2_RAT
PSMD1_RAT
PSMD1_RAT
ELMD3_RAT
RECQ5_RAT
PSMD1_RAT
PNMA1_RAT
PSMD1_RAT
TBA1A_RAT
RXFP1_RAT
H14_RAT
ATPA_RAT
PSMD1_RAT
PNMA1_RAT
1433E_RAT
PHRF1_RAT
PSMD1_RAT
IMA6_RAT
H31_RAT
PHRF1_RAT
H2B1A_RAT
H2AZ_RAT
PHRF1_RAT
H2B1A_RAT
MRP5_RAT
H4_RAT
PSMD1_RAT
PNMA1_RAT
Heat shock protein HSP 90-beta
26S proteasome non-ATPase regulatory subunit 1
Signal-induced proliferation-associated 1-like protein 2
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 1
ELMO domain-containing protein 3
ATP-dependent DNA helicase Q5
26S proteasome non-ATPase regulatory subunit 1
Paraneoplastic antigen Ma1 homolog
26S proteasome non-ATPase regulatory subunit 1
Tubulin alpha-1A chain
Relaxin receptor 1
Histone H1.4
ATP synthase subunit alpha, mitochondrial
26S proteasome non-ATPase regulatory subunit 1
no significant hit
Paraneoplastic antigen Ma1 homolog
14-3-3 protein epsilon
PHD and RING finger domain-containing protein 1
26S proteasome non-ATPase regulatory subunit 1
no significant hit
Importin subunit alpha-6
Histone H3.1
PHD and RING finger domain-containing protein 1
Histone H2B type 1-A
Histone H2A.Z
PHD and RING finger domain-containing protein 1
Histone H2B type 1-A
Multidrug resistance-associated protein 5
Histone H4
26S proteasome non-ATPase regulatory subunit 1
Paraneoplastic antigen Ma1 homolog
24
ASPG_RAT
PHRF1_RAT
PSMD1_RAT
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
PHD and RING finger domain-containing protein 1
26S proteasome non-ATPase regulatory subunit 1
SPROT ID, Swiss-Prot ID; MW, Molecular Weight
GCN2-deficient condition under amino acid deficiency
Sample #
10
11
12
13
SPROT ID
MYH7_RAT
MYH6_RAT
MAP1B_RAT
MYH7_RAT
MYH6_RAT
MYH6_RAT
IMA6_RAT
CAN10_RAT
CLH1_RAT
ELMD3_RAT
ELMD3_RAT
HS90B_RAT
H14_RAT
CENPW_RAT
HSP7C_RAT
GRP78_RAT
H14_RAT
ATPA_RAT
Protein name
Myosin-7
Myosin-6
Microtubule-associated protein 1B
Myosin-7
Myosin-6
Myosin-6
Importin subunit alpha-6
Calpain-10
no significant hit
Clathrin heavy chain 1
ELMO domain-containing protein 3
no significant hit
ELMO domain-containing protein 3
Heat shock protein HSP 90-beta
Histone H1.4
Centromere protein W
Heat shock cognate 71 kDa protein
78 kDa glucose-regulated protein
no significant hit
no significant hit
no significant hit
Histone H1.4
ATP synthase subunit alpha, mitochondrial
14
15
16
17
18
19
20
21
22
23
24
TBB2A_RAT
TBA1A_RAT
ATPB_RAT
EF1A1_RAT
G3P_RAT
H14_RAT
1433E_RAT
TPM1_RAT
PHRF1_RAT
RXFP1_RAT
1433Z_RAT
UBP1_RAT
RS25_RAT
H31_RAT
H2B1A_RAT
PCNP_RAT
BSCL2_RAT
H2AZ_RAT
NCBP2_RAT
PHRF1_RAT
C56D2_RAT
CENPW_RAT
H4_RAT
IMA6_RAT
Tubulin beta-2A chain
Tubulin alpha-1A chain
ATP synthase subunit beta, mitochondrial
Elongation factor 1-alpha 1
no significant hit
Glyceraldehyde-3-phosphate dehydrogenase
Histone H1.4
14-3-3 protein epsilon
Tropomyosin alpha-1 chain
PHD and RING finger domain-containing protein 1
Relaxin receptor 1
14-3-3 protein zeta/delta
Ubiquitin carboxyl-terminal hydrolase 1
no significant hit
40S ribosomal protein S25
Histone H3.1
Histone H2B type 1-A
PEST proteolytic signal-containing nuclear protein
Seipin
Histone H2A.Z
Nuclear cap-binding protein subunit 2
PHD and RING finger domain-containing protein 1
Cytochrome b561 domain-containing protein 2
Centromere protein W
Histone H4
Importin subunit alpha-6
SPROT ID, Swiss-Prot ID; MW, Molecular Weight
p‐TSC2
pTSC2/TSC2
2.5
1.5
0.5
GCN2+/+
GCN2−/−
p-TSC2
TSC2
Fig. 1A
1.5
2.5
1.5
0.5
0.5
GCN2+/+
p-S6K1
S6K1
2.5
p4EBP1/4EBP1
**
2.5
**
3.5
pS6/S6
pS6K1/S6K1
p-4EBP1
p-S6
p-S6K1
**
1.5
0.5
GCN2−/−
GCN2+/+
p-S6
GCN2+/+
GCN2−/−
GCN2−/−
p-4EBP1
S6
Fig.1 B,C,D
Production of HaloTag
Wild‐type mice
GCN2−/− mice
HFD
GCN2
14‐3‐3β
GCN2
ATF4
Formation of protein complex
ATF4
14‐3‐3β
14‐3‐3β
TSC2
mTORC1
Insulin
signaling
Maintenance of
pancreatic β‐cell mass
HaloTag
TSC2
mTORC1
Negative feedback
Insulin
signaling
Pull‐down by HaloTag
Reduction in
pancreatic β‐cell mass
Fig. 2A
1.4
1.2
0.8
0.6
p-TSC2
0.4
TSC2
0.2
Fig. 2B
NC AD GDAD
205
113
79
47
34
27
17
Fig. 2C
1.5
0.5
**
**
1.8
Relative expression
Relative expression
2.5
1.6
1.4
1.2
0.8
0.6
0.4
0.2
Fig. 3A,B
2.5
1.5
0.5
1.4
**
1.2
Relative expression
Relative expression
0.8
0.6
0.4
0.2
Fig. 3C,D
L-Asparaginase
**
Relative expression
3.5
**
2.5
1.5
**
0.5
Fig. 4A
L-Asparaginase
1.2
1.2
0.8
0.6
0.4
**
0.2
Relative expression
Relative expression
L-Asparaginase
0.8
0.6
**
0.4
0.2
Control GCN2 KD
Control ATF4 KD
Fig. 4B,C
p-S6K1
L-Asparaginase
1.2
1.8
1.4
0.8
0.6
0.4
**
pS6K1/S6K1
Relative expression
1.6
1.2
0.8
0.6
0.4
0.2
0.2
p-S6K1
S6K1
Fig. 5A,B
p-4EBP1
p-S6
1.8
**
1.6
1.2
pS6/S6
1.4
p4EBP1/4EBP1
1.4
0.8
0.6
0.4
1.2
0.8
0.6
0.4
0.2
0.2
p-S6
S6
1.6
p-4EBP1
4EBP1
Fig. 5C, D
HFD
In pancreatic β‐cell
Insulin demand
Insulin synthesis
Amino acid concentration
uncharged tRNA
GCN2−/− mice
Wild‐type mice
P GCN2
GCN2
ATF4
Aspg
Sestrin2
14‐3‐3β
TSC2
mTORC1
14‐3‐3β
ATF4
Aspg
Sestrin2
TSC2
mTORC1
Negative feedback
Insulin signaling
Maintenance of
pancreatic β‐cell mass
Insulin signaling
Reduction in
pancreatic β‐cell mass
Fig. 5E
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