リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

大学・研究所にある論文を検索できる 「Repeatability of phenotypic evolution of tree-like organisms.」の論文概要。リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

コピーが完了しました

URLをコピーしました

論文の公開元へ論文の公開元へ
書き出し

Repeatability of phenotypic evolution of tree-like organisms.

Nonoyama Tomonobu 東北大学

2020.03.25

概要

The evolutionary patterns of geological time scale have been studied in order to document the processes underlying the dynamics. A number of studies have examined how adaptation, interaction among lineages, and stochastic process yield temporal and spatial patterns in phenotypic, genetic and taxonomic diversity. However, it still remains unclear how long term evolutionary dynamics of phenotypic diversity are created in ecosystems.
 First, I examine whether evolutionary history is mostly contingent or deterministic has been given much focus in the field of evolutionary biology. In the present study, to incorporate the effects of phenotypic plasticity, we constructed a model using tree-like organisms. In this model, the basic rules used to develop trees are genetically determined, but tree shape (described by the number and aspect ratio of the branches) is determined by both genetic components and plasticity. The results of the simulation show that the tree shapes become more deterministic under higher mutation rates. However, the tree shape became most contingent and diverse at the lower mutation rate. In this situation, the variances of the genetically determinant characters were low, but the variance of the tree shape is rather high, suggesting that phenotypic plasticity results in this contingency and diversity of tree shape. The present findings suggest that plasticity cannot be ignored as a factor that increases contingency and diversity of evolutionary outcomes.
 Second, by using the same model, I examine how patterns of extinction are affected by mutation rates (speciation rate in macro level). The result shows that, in the systems with interaction among individuals, a pattern of extinction similar to “mass extinction” is observed under moderate levels of mutation rates (speciation rates). In addition, extinction rates decrease through time.
 Finally, I examine how phenotypes and their fitness archived after a long time evolution change depending on mutation rates, interactions among individuals and plasticity. The result shows that low level of mutation rates and plasticity promotes adaptation to distinctive environments and creates distinctive morphology.
Discontinuous evolutionary patterns appear through the effects of plasticity. These findings reveal the usefulness of simulation to understand the causes of the patterns of long term evolution. The implication and limitation of the present model and insight obtained are discussed.

この論文で使われている画像

参考文献

Aerts R. 1999. Interspecific competition in natural plant communities: mechanisms, trade-offs and plant-soil feedbacks. Journal of Experimental Botany 50: 29–37.

Alroy J. 2010. The shifting balance of diversity among major marine animal groups. Science 329:1191–1194

Alroy J. 2014. Accurate and precise estimates of origination and extinction rates, Paleobiology 40:374-397,

Bak P 1997. How Nature Works. The Science of Self-Organized Criticality, Oxford University Press.

Beldade P, Koops K & Brakefield PM. 2002. Developmental constraints versus flexibility in morphological evolution. Nature 416: 844–847.

Benton MJ, Harper, DAT. 2009. Introduction to Paleobiology and the Fossil Record. John Wiley & Sons, Oxford.

Chouard T 2010. Evolution: Revenge of the hopeful monster. Nature 463: 864–867.

Flessa KW, Jablonski D 1985. Declining Phanerozoic background extinction rates: Effect of taxonomic structure? Nature 313:216–218.

Foster WJ, Twitchett RJ. 2014. Functional diversity of marine ecosystems following the late Permian mass extinction event. Nature Geoscience 8: 233–238.

Fogle CA, Nagle JL & Desai MM. 2008. Clonal interference, multiple mutations and adaptation in large asexual populations. Genetics 180: 2163–2173.

Fourcaud T, Blaise F, Lac P, Castéra P & de Reffye P. 2003. Numerical modelling of shape regulation and growth stresses in trees. Trees 17: 31–39.

Fox JF. 1977. Alternation and Coexistence of Tree Species. The American Naturalist 111: 69–89.

Franke J, Klözer A, de Visser JAGM & Krug J. 2011. Evolutionary Accessibility of Mutational Pathways Wilke, C. O. (ed.). PLoS Computational Biology 7: e1002134.

Futuyma D J 2015. Can modern evolutionary theory explain macroevolution? In EE Serreli, & N Gontier eds., Macroevolution. Interdisciplinary evolution research, pp. 29–85. Cham: Springer

Gavrilets S. 2004. Fitness Landscapes and the Origin of Species. Princeton, Princeton Univ. Press.

Galis F, Metz H, van Alphen J 2018. Development and Evolutionary Constraints in Animals. Annual Review of Ecology, Evolution, and Systematics 49: 499-522.

Gould SJ, Eldredge N 1977. Punctuated equilibria: the tempo and mode of evolution reconsidered. Paleobiology 3:115-151.

Ghalambor CK, McKay JK, Carroll SP, Reznick DN 2007. Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments. Functional Ecology 21:394–407.

Graus RR & Macintyre IG. 1976. Light control of growth form in colonial reef corals: Computer simulation. Science 193: 895–897.

Grubb PJ. 1977. THE MAINTENANCE OF SPECIES-RICHNESS IN PLANT COMMUNITIES: THE IMPORTANCE OF THE REGENERATION NICHE. Biological Reviews 52: 107–145.

Harnik, PG, Lotze, HK, Anderson SC, Finkel ZV, Finnegan S, et al. 2012. Extinctions in ancient and modern seas. Trends in Ecology & Evolution, 27: 608–617.

Hunt G, Rabosky DL 2014. Phenotypic evolution in fossil species: Pattern and process. Annual Review of Earth and Planetary Sciences. 42:421–441.

Honda H. 1971. Description of the form of trees by the parameters of the tree-like body: Effects of the branching angle and the branch length on the shape of the tree-like body. Journal of Theoretical Biology 31: 331–338.

Honda H & Fisher JB. 1978. Tree branch angle: maximizing effective leaf area. Science (New York, N.Y.) 199: 888–890.

Honda H & Fisher JB. 1979. Ratio of tree branch lengths: The equitable distribution of leaf clusters on branches. Proceedings of the National Academy of Sciences of the United States of America 76: 3875–3879.

Jablonski D 2017. Approaches to macroevolution: 1. General concepts and origin of variation. Evolutionary Biology 44:1–24.

Jackson ISC 2019. Developmental bias in the fossil record. Evolution & Development 21: e12312

Jain S, Krishna S. 2002 Large extinctions in an evolutionary model: the role of innovation and keystone species. Proceedings of the National Academy of Sciences. USA 99:2055-2060.

Jin Y. 2005. A comprehensive survey of fitness approximation in evolutionary computation. Soft Computing 9: 3–12.

Kanemaru N, Chiba N, Takahashi K & Saito N. 1992. Simulation of Natural Shapes of Botanical trees Based on Heliotropism. IEICE transactions on Information and Systems. 75: 76–85.

Kärenlamp PP 2016. Evolution models with extremal dynamics. Heliyon 2: e00144 Katsnelson MI, Wolf YI, Koonin EV 2019. On the feasibility of saltational evolution. Proc. Natl. Acad. Sci. USA 116: 21068–21075.

Keller TE, Wilke CO & Bull JJ. 2012. INTERACTIONS BETWEEN EVOLUTIONARY PROCESSES AT HIGH MUTATION RATES. Evolution 66: 2303–2314.

Kenkel CD, Matz MV 2016. Gene expression plasticity as a mechanism of coral adaptation to a variable environment. Nature Ecology & Evolution 1: 0014.

Kidwell SM, Holland SM 2002. The quality of the fossil record: implications for evolutionary analyses. Annual Reviews of Ecology and Systematics, 33:561‒88.

Koike F. 1989. Foliage-Crown Development and Interaction in Quercus Gilva and Q. Acuta. The Journal of Ecology 77: 92.

Kravchinsky VA 2012. Paleozoic large igneous provinces of Northern Eurasia: Correlation with mass extinction events. Global and Planetary Change 86:31-36.

Lafuente E, Beldade P 2019. Genomics of developmental plasticity in animals. Frontiers in Genetics, 10:720.

Landis MJ, Schraiber JG 2017. Pulsed evolution shaped modern vertebrate body sizes. Proceedings of the National Academy of Sciences. USA 114:13224-13229 Levis NA, Pfennig DW 2016. Evaluating “plasticity-first” evolution in nature: key

criteria and empirical approaches. Trends in Ecology & Evolution. 31:563–574.

Long J, Large RR, Lee MSY, Benton MJ, Danyushevsky LV, Chiappe LM, Halpin JA, Cantrill D, Lottermoser B 2015. Severe Selenium depletion in the Phanerozoic oceans as a factor in three global mass extinction events. Gondwana Research. 36: 209–218.

Lobkovsky AE & Koonin E V. 2012. Replaying the Tape of Life: Quantification of the Predictability of Evolution. Frontiers in Genetics 3.

MacLeod, N. 2004. Identifying Phanerozoic extinction controls: statistical considerations and preliminary results. In Beaudoin, A. B. and Head, M. J., eds. The palynology and micropaleontology of boundaries. Geological Society of London Special Publication.

McKinney ML 1993. Evolution of Life. Engelwood Cliffs, Prentice Hall, NJ.

Merks RMH, Hoekstra AG, Kaandorp JA & Sloot PMA. 2004. Polyp oriented modelling of coral growth. Journal of Theoretical Biology 228: 559–576.

Moran NA 1992. The evolutionary maintenance of alternative phenotypes. The American Naturalist 139:971–989.

Newman, M.E.J. 1997. A model of mass extinction, Journal of Theoretical Biology 189:235-252.

Newman MEJ, Eble GJ, 1999. Decline in extinction rates and scale invariance in the fossil record. Paleobiology 25:434-439.

Nikinmaa E, Messier C, Sievanen R, Perttunen J & Lehtonen M. 2003. Shoot growth and crown development: effect of crown position in three-dimensional simulations. Tree Physiology 23: 129–136.

Niklas KJ. 1997. Adaptive walks through fitness landscapes for early vascular land plants. American Journal of Botany 84: 16–25.

Ohno R, Sentoku A, Ezaki Y & Masumoto S. 2016. Modelling and Simulation of Morphogenesis in Colonial Azooxanthellate Scleractinians. Geoinformatics 27: 3–12.

Onoda Y, Wright IJ, et al. 2017. Physiological and structural tradeoffs underlying the leaf economics spectrum. New Phytologist 214: 1447–1463.

Orgogozo V. 2015. Replaying the tape of life in the twenty-first century. Interface Focus 5: 20150057.

Perttunen J, Sievänen R & Nikinmaa E. 1998. LIGNUM: a model combining the structure and the functioning of trees. Ecological Modelling 108: 189–198.

Pigliucci M, Murren CJ & Schlichting CD. 2006. Phenotypic plasticity and evolution by genetic assimilation. The Journal of experimental biology 209: 2362–2367.

Raup DM, Sepkoski JJ Jr 1982. Mass extinctions in the marine fossil record. Science 215:1501–1503

Raup DM, Gould SJ 1974. Stochastic simulation and evolution of morphology towards a nomothetic paleontology. Systematic Zoology 23:305–322

Schulte P, Alegret L, Arenillas I, Arz JA, Barton PJ, Bown PR, Bralower TJ, et al. 2010. The Chicxulub asteroid impact and mass extinction at the Cretaceous–Paleogene boundary. Science 327:1214–1218.

Sentoku A & Ezaki Y. 2012. Regularity in budding mode and resultant growth morphology of the azooxanthellate colonial scleractinian Tubastraea coccinea. Coral Reefs 31: 67–74.

Sepkoski JJ Jr 1984. A kinetic model of Phanerozoic taxonomic diversity. III. Post-Paleozoic families and mass extinctions. Paleobiology 10:246–267

Sole´ RV, Manrubia SC 1996. Extinction and selforganized criticality in a model of large-scale evolution. Physical Reviews 54:R42–R45.

Sol´e RV, Bascompte, J 1996. Are critical phenomena relevant to large-scale evolution? Proc. R. Soc. Lond. B 263:161-168.

Sorrensen-Cothern KA, Ford ED & Sprugel DG. 1993. A Model of Competition Incorporating Plasticity through Modular Foliage and Crown Development. Ecological Monographs 63: 277–304.

Sprain C J, Renne PR, Vanderkluysen L, Pande K, Self S, Mittal T 2019. The eruptive tempo. 768 of Deccan volcanism in relation to the Cretaceous-Paleogene boundary. Science 363:866-870.

Stanley SM 2016. Estimates of the magnitudes of major marine mass extinctions in earth history. Proceedings of the National Academy of Sciences. U S A 113:E6325–E6334

Schwartz SA, Budd AF, Carlon DB 2012. Molecules and fossils reveal punctuated diversification in Caribbean "faviid" corals. BMC Evolutionary Biology 12: 123.

Szathmáry E 2015. Toward major evolutionary transitions theory 2.0. Proceedings of the National Academy of Sciences. U.S.A. 112:10104–10111.

Takenaka A. 1994. A simulation model of tree architecture development based on growth response to local light environment. Journal of Plant Research 107: 321–330.

Veron JEN 2008. Mass extinctions and ocean acidification, biological constraints on geological dilemmas. Coral Reefs 27:459–472.

Wiens D, Slaton MR 2011. The mechanism of background extinction. Biological Journal of the Linnean Society, 105: 255-268.

Webster M 2019. Morphological homeostasis in the fossil record. Seminars in Cell & Developmental Biology 88:91–104.

Yokozawa M, Kubota Y & Hara T. 1996. Crown architecture and species coexistence in plant communities. Annals of Botany 78: 437–447.

Yoshizawa D & Yokozawa H. 2007. Trees Growth Modeling in Consideration of the Photoenvironment. Journal of Graphic Science of Japan 41: 3–9.

秀一大木. 2017. 生理人類学におけるふたご研究. 日本生理人類学会誌 22: 97–105.

参考文献をもっと見る

全国の大学の
卒論・修論・学位論文

一発検索!

この論文の関連論文を見る