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KIFC1 regulates ZWINT to promote tumor progression and spheroid formation in colorectal cancer

赤羽 慎太郎 広島大学

2021.09.17

概要

Colorectal cancer (CRC) is estimated to have more than 1.8 million new cases (ranks
third) and 881,000 deaths (ranks second) worldwide according to the Global Cancer
Statistics in 2018.1 The survival rate of patients with early-stage CRC is relatively high;
however, approximately 60 % of the cases are found in the later stage.2 The five-year
survival rate of stage IV patients is estimated to drop as low as 12.5 %.3 Therefore, there
is an urgent need for determining a novel molecular target for CRC treatment strategies. ...

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参考文献

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Figure legends

Figure 1 Expression of KIFC1 in CRC tissue samples. (a) qRT-PCR analysis of KIFC1

in 14 kinds of normal tissues and 28 CRC tissue samples. The units are arbitrary, and

KIFC1 expression was standardized against 1.0 μg of total RNA from normal colon

tissue as 1.0. (b) Immunohistochemical staining of KIFC1 in colon adenocarcinoma.

Left panel, original magnification, ×40. Right panel, a high-magnification image of the

field designated by a box in the left panel. Original magnification, ×400. (c)

Immunohistochemical analysis of KIFC1, CD44, and ALDH1. Original magnification,

×100. Right-upper panel, a high-magnification image of the field designated by a black

box. Original magnification, ×400. (d) Kaplan–Meier plot of overall survival of CRC

patients. (e) Kaplan–Meier plot of short-term survival (1 to 80 months) of CRC patients

in TCGA database.

Figure 2 Functional analysis of KIFC1 in CRC cells. (a) Western blot analysis of

KIFC1 in 4 CRC cell lines. (b) Western blot analysis of KIFC1, Akt, phospho-Akt

(pAkt), Erk 1/2 and phospho-Erk1/2 (pErk1/2) in lysates of DLD-1 and WiDr cells

transfected with KIFC1 siRNA or negative control siRNA. β-actin was used as a

loading control. (c) Effects of KIFC1 knockdown on DLD-1 and WiDr cell growth. Cell

growth was assessed spectrometrically by MTT assay at 1, 2, and 4 days after seeding.

Bars and error bars indicate mean and S.D., respectively, of three independent

experiments. (d) Number and size of spheroids formed by DLD-1 and WiDr cells

25

transfected with KIFC1 or negative control siRNAs. Bars and error bars indicate mean

and S.D., respectively, of three independent experiments.

Figure 3 Cytotoxic effect of KIFC1 inhibitor and analysis of ZWINT expression. (a)

KAA inhibited CRC growth in a dose-dependent manner. Cell growth was assessed

spectrometrically by MTT assay at 1, 2, and 4 days after seeding. Bars and error bars

indicate mean and S.D., respectively, of three independent experiments. NS, not

significant. (b) Immunohistochemical staining of KIFC1 and ZWINT in colon

adenocarcinoma. Original magnification, ×40. Right-lower panel, a high-magnification

image of the field designated by a black box. Original magnification, ×400. (c) Kaplan–

Meier plot of overall survival of CRC patients. (d) Correlation between KIFC1 and

ZWINT expressions in colorectal adenocarcinoma samples in TCGA gene-level

expression data (n = 512). (e) KIFC1 and ZWINT expressions reduced by KIFC1

inhibitor in a time-dependent manner. (f) ZWINT expression downregulated in KIFC1

siRNA‐transfected cells. β-actin was used as a loading control.

Figure 4 Effect of ZWINT inhibition on the biological functions of CRC cells. (a)

Western blot analysis of ZWINT, KIFC1, Akt, pAkt, Erk1/2, and pErk1/2 in lysates of

CRC cells transfected with ZWINT siRNA or negative control siRNA. β-actin was used

as a loading control. (b) ZWINT knockdown inhibited CRC cell growth. Cell growth

was assessed spectrometrically by MTT assay at 1, 2, and 4 days after seeding. Bars and

26

error bars indicate mean and S.D., respectively, of three independent experiments. (c)

Number and size of spheroids formed by CRC cells transfected with ZWINT or

negative control siRNA. Bars and error bars indicate mean and S.D., respectively, of

three independent experiments.

List of supplementary material

Supplementary Material and methods Quantitative reverse transcription PCR (qRTPCR), Western blot, Gene expression data from The Cancer Genome Atlas (TCGA),

Wound healing assay, Conventional adenoma tissue samples

Supporting Table 1 Primer sequences used for qRT-PCR

Supporting Table 2 Clinicopathologic characteristics of 28 patients with CRC

Supporting Table 3 List of genes downregulated by the KIFC1-specific inhibitor,

kolavenic acid analog

Supporting Table 4 Correlation between ZWINT expression and clinicopathologic

characteristics

27

Supporting Figure 1 Representative images and wound contraction percentage of a

wound-healing assay in DLD-1 (a) and WiDr (b) cells treated with KAA. Bars and error

bars indicate mean and S.D., respectively, of three independent experiments. NS, not

significant.

Supporting Figure 2 Comparison of mRNA expression levels of genes downregulated

by the KIFC1 inhibitor (kolavenic acid analog) in CRC tissue samples. Fold changes

between CRC tissue (T) and corresponding non-neoplastic mucosa (N) are

demonstrated.

Supporting Figure 3 Summary of immunohistochemical staining of KIFC1 and

ZWINT in conventional colon adenomas. The graph indicates the number of cases with

staining status. CALG, conventional adenoma low grade; CAHG, conventional

adenoma high grade.

28

29

30

31

32

Table 1 Correlation between KIFC1 expression and cancer stem cell markers

KIFC1 expression

Positive

p-value*

Negative

CD44

0.011

Positive

41 (63 %)

24

Negative

26 (41 %)

38

ALDH1

0.009

Positive

37 (65 %)

20

Negative

30 (42 %)

42

* Chi-square

test

33

Table 2 Relationship between KIFC1 expression and clinicopathologic characteristics

KIFC1 expression

Age

 ≤ 60

 > 60

Sex

 Men

 Women

Tumor location

Right colon

Left colon

Histological classification

Well/moderate

Poor/mucinous

Positive

Negative

26 (62 %)

41 (47 %)

16

46

0.115

0.487

22 (48 %)

45 (54 %)

24

38

0.502

18 (47 %)

49 (54 %)

20

42

0.822

62 (52 %)

5 (56 %)

58

T classification

T1/T2

T3/T4

17 (42 %)

50 (57 %)

24

38

N classification

N0

N1/N2/N3

25 (40 %)

42 (63 %)

37

25

M classification

M0

M1

44 (44 %)

23 (82 %)

57

Stage

Stage I/II

Stage III/IV

21 (36 %)

46 (65 %)

37

25

ZWINT expression

Negative

Positive

* Chi-square test

p-value*

0.104

0.011

< 0.001

0.001

< 0.001

20 (29 %)

47 (77 %)

48

14

34

Table 3 Univariate and multivariate Cox regression analysis of overall survival

Age

 ≤60

 >60

Univariate analysis

HR

95 % CI

p-value

0.870

1 (Ref.)

0.946

0.486–1.840

Sex

 Men

 Women

1 (Ref.)

0.756

Tumor location

Right colon

Left colon

1 (Ref.)

0.572

Histological classification

Well/moderate

Poor/mucinous

1 (Ref.)

2.73

Stage

Stage I/II

Stage III/IV

1 (Ref.)

12.617 3.867–41.170

KIFC1 expression

Negative

Positive

ZWINT expression

Negative

Positive

Multivariate analysis

HR

95 % CI

p-value

0.427

0.380–1.506

0.100

0.294–1.113

0.058

0.965–7.721

< 0.001

0.002

1 (Ref.)

6.997

2.083–23.508

< 0.001

1 (Ref.)

9.318 3.293–26.369

0.029

1 (Ref.)

3.642

1.142–11.609

< 0.001

1 (Ref.)

8.912 3.468–22.906

HR, hazard ratio; CI, confidence interval

0.035

1 (Ref.)

3.139

1.087–9.068

35

Supplementary Material and methods

Quantitative reverse transcription PCR (qRT-PCR)

Total RNA was extracted using RNeasy Mini Kit (Qiagen, Valencia, CA, USA) and 1

μg of total RNA was converted to cDNA with First Strand cDNA Synthesis Kit

(Amersham Biosciences Corp., Piscataway, NJ, USA). qPCR was performed using

SYBR Green PCR Core Reagents Kit (Applied Biosystems, Foster City, CA, USA) and

the emission intensity was detected on ABI PRISM 7700 Sequence Detection System

(Applied Biosystems) as described previously.17 β-actin (ACTB gene)-specific PCR

products amplified from the same RNA samples served as internal control. Primer

sequences used in this analysis are summarized in Supporting Table 1.

Western blot

Cells were lysed as previously described.19 The lysates (40 μg) were solubilized in

Laemmli sample buffer by boiling and then subjected to 10 % SDS-PAGE. Following

electrophoresis, the bands were electrotransferred onto a nitrocellulose membrane that

was further incubated with primary antibodies against KIFC1 and ZWINT. Peroxidaseconjugated anti-mouse and anti-rabbit IgG were used in the secondary reaction.

Immunocomplexes were visualized with ECL Western Blot Detection system

(Amersham Biosciences Corp.). β-actin (Sigma, St. Louis, MO, USA) was used as the

loading control.

36

Gene expression data from The Cancer Genome Atlas (TCGA)

For analyzing gene expression data, TCGA colon adenocarcinoma gene-level

expression data (n = 439 samples, version 2016) were downloaded from OncoLnc

(http://www.oncolnc.org/). In the Kaplan–Meier analysis, we used receiver operating

characteristic (ROC) curve analysis to define the cut-off point for the KIFC1 expression

that correlated with the prognosis. KIFC1 expression was considered high if the

expression score was above the cut-off value and low if the score was equal to or below

the cut-off value. For analyzing the correlation between KIFC1 and ZWINT expressions,

TCGA colon adenocarcinoma gene-level expression data (n = 512 samples, version

2019) were downloaded from UCSC Xena hub (http://xena.ucsc.edu) as log2 values of

the RSEM normalized counts.

Wound healing assay

To carry out the wound healing assay, the treated cells were plated onto collagen̺

coated coverslips. The monolayer cells were then scratched manually with a plastic

pipette tip, and after being washed with PBS, the wounded monolayers of the cells were

allowed to heal in RPMI 1640 containing 10% FBS. Wound healing was measured by

wound contraction percentage and captured at 0, 24, 48, or 60 hours after scratching.

37

Conventional adenoma tissue samples

Twenty primary colorectal adenoma samples were collected from patients who

underwent endoscopic or surgical resection at Hiroshima University Hospital or its

affiliated hospitals. The distribution of colorectal adenomas was as follows:

conventional adenoma low grade (CALG), n = 10; conventional adenoma high grade

(CAHG), n = 10.

Supporting Table 1 Primer sequences used for qRT-PCR

Gene

Forward primer

Reverse primer

KIFC1

GACGCCCTGCTTCATCTG

CCAGGTCCACAAGACTGAGG

FAM111B

TGGACAGACTCTCCGGTTCT TCTGCTTCATGACAGTATCCTTG

CEP128

GGATCTCTGCAGGACCGTGTA TTCTCAGGCACAGACTCCAGA

METTL7A

GCATTGCAGAGAACCGACAC AAATAGAAAGCCCCTCCCGGT

ARHGEF39 GTCTCCTCAAGGTGACAGCC AACCACCGTCAATGAGCACT

ERN2

TGCTCATTGGACACCACGAG CGGCTGTTGCTCCAAGAAGA

ACSM3

GGTTCAGGGCTGCTCTTCTA

ZWINT

AGGTTTCTGCAGAGGGTAAGC ACAGCCTTGAAGGACACACC

CGCTGAAAACACTTGGCATGA

38

Supporting Table 2 Clinicopathologic characteristics of 28 patients with CRC

Number of cases

Age, median (range)

28

68 (43-93)

Sex (%)

Men

14 (50%)

Women

14 (50%)

Tumor location (%)

Right colon

16 (57%)

Left colon

12 (43%)

Differentiation (%)

Well/moderate

22 (79%)

Poor/mucinous

6 (21%)

pT classification (%)

T1/T2

9 (32%)

T3/T4

19 (68%)

pN classification (%)

N0

13 (46%)

N1/N2/N3

15 (54%)

pM classification (%)

M0

25 (89%)

M1

3 (11%)

pStage (%)

Stage I/II

13 (46%)

Stage III/IV

15 (54%)

39

Supporting Table 3 List of genes downregulated by the KIFC1 inhibitor, kolavenic

acid analog

Gene symbol

Gene name

Fold change

FAM111B

family with sequence similarity 111, member B

0.137738139

CEP128

centrosomal protein 128 kDa

0.153893052

METTL7A

methyltransferase like 7A

0.156041319

ARHGEF39

Rho guanine nucleotide exchange factor 39

0.167240944

ERN2

endoplasmic reticulum to nucleus signaling 2

0.211686328

ACSM3

acyl-CoA synthetase medium-chain family member 3 0.251738888

ZWINT

ZW10 interacting kinetochore protein

0.267943366

KIFC1

kinesin family member C1

0.332171454

40

Supporting Table 4 Correlation between ZWINT expression and clinicopathologic

characteristics

ZWINT expression

Positive

Negative

Age

≤ 60

 > 60

Sex

Men

Women

0.421

22 (52 %)

39 (45 %)

20

48

0.080

44 (53 %)

17 (37 %)

39

29

20 (53 %)

41 (45.1 %)

18

50

Histological classification

Well/moderate

Poor/mucinous

55 (46 %)

6 (67 %)

65

pT classification

T1/T2

T3/T4

10 (24 %)

51 (58 %)

31

37

pN classification

N0

N1/N2/N3

17 (27 %)

44 (66 %)

45

23

Tumor location

Right colon

Left colon

pM classification

M0

M1

pStage

Stage I/II

Stage III/IV

Chi-square test

p-value*

0.432

0.227

< 0.001

< 0.001

0.001

40 (40 %)

21 (75 %)

61

<0.001

15 (26 %)

46 (65 %)

43

25

41

(a)

(b)

Supporting Figure 1 Representative images and wound contraction percentage of a

wound-healing assay in DLD-1 (a) and WiDr (b) cells treated with KAA. Bars and error

bars indicate mean and S.D., respectively, of three independent experiments. NS, not

significant.

42

10

ARHGEF39

12

10

1 2 3 4 5 6 7 8 9 10

ERN2

1 2 3 4 5 6 7 8 9 10

Fold change (T/N)

12

Fold change (T/N)

10

1 2 3 4 5 6 7 8 9 10

F ld change

Fold

h g (T/N)

12

10

Fold change (T/N)

Fold change (T/N)

Fold change (T/N)

(T/N

1 2 3 4 5 6 7 8 9 10

F ld change

Fold

(T/N)

METTL7A

12

1 2 3 4 5 6 7 8 9 10

ACSM3

12

10

F ld change

Fold

(T/N)

CEP128

Fold change (T/N)

F ld change

Fold

h g (T/N)

10

12

Fold change (T/N)

FAM111B

Fold change (T/N)

Fold change (T/N)

Fold change (T/N)

12

1 2 3 4 5 6 7 8 9 10

ZWINT

10

1 2 3 4 5 6 7 8 9 10

Supporting Figure 2 Comparison of mRNA expression levels of genes downregulated

by the KIFC1 inhibitor (kolavenic acid analog) in CRC tissue samples. Fold changes

between CRC tissue (T) and corresponding non-neoplastic mucosa (N) are

demonstrated.

43

ZWINT

KIFC1

10

Negative

Positive

Negative

Weak

10

p = 0.606

CALG

CAHG

p = 0.531

CALG

CAHG

Supporting Figure 3 Summary of immunohistochemical staining of KIFC1 and

ZWINT in conventional colon adenomas. The graph indicates the number of cases with

staining status. CALG, conventional adenoma low grade; CAHG, conventional

adenoma high grade.

...

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