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Genomic and ecological studies on novel Arcobacter isolated from abalone

Mizutani Yukino 三重大学

2020.06.24

概要

Arcobacter, formerly classified as Campylobacter, is a member of the class Epsilonproteobacteria, as proposed by Vandamme et al. (1991). Some Arcobacter bacteria have shown pathogenicity to humans, and thus many studies have focused on livestock. Species isolated from pork, broiler carcasses, cattle, ducks, human stool, or porcine abortions (Figure 1) include: Arcobacter cryaerophilus (Neill et al. 1985), A. butzleri (Kiehlbauch et al. 1991 and Vandamme et al. 1992), A. skirrowii (Vandamme et al. 1992), A. cibarius (Houf et al. 2005), A. thereius (Houf et al. 2009), A. trophiarum (De Smet et al. 2011), A. defluvii (Collado et al. 2011), A. suis (Levican et al. 2013), A. cloacae (Levican et al. 2013), A. lanthieri (Whiteduck‐Léveillée et al. 2015), A. faecis (Whiteduck‐Léveillée et al. 2016), A. lacus (Pérez‐Cataluña et al. 2018b), and A. caeni (Pérez‐Cataluña et al. 2018b). Among them, A. butzleri, A. cryaerophilus, and A. skirrowii are considered to be of clinical interest because they are associated with gastrointestinal disease and bacteremia in humans, and with reproduction disorders, mastitis, and gastric ulcers in farm animals (Ho et al. 2006). Arcobacter thereius was also isolated from porcine abortions, but the pathological potential of this species is still unknown (Houf et al. 2009). In contrast, other species have not been directly associated with animal or human diseases.

Recently, Arcobacter spp. have also been isolated from marine environments, such as seawater and coastal sediments, and from marine invertebrates (Figure 1). To date, 18 Arcobacter species from a total of 29 have been isolated from marine environments (Table 1), suggesting that this environment may be one of the main habitats for this genus. Arcobacter are found in bivalves (Collado et al. 2009b, Laishram et al. 2016, Levican et al. 2014, Salas‐Massó et al. 2016). Romero et al. (2002) reported Arcobacter spp. are widespread in the Chilean oyster in their analysis using 16S rRNA‐RFLP. In addition to bivalves, it has been reported that Arcobacter spp. are found in European lobsters (Meziti et al. 2012) and abalone (Tanaka et al. 2004). These results suggest that Arcobacter spp. are widely distributed in marine invertebrates, and potentially indigenous bacteria may play some important role in the host. However, knowledge on the presence and diversity of Arcobacter associated with marine invertebrates including abalone is still lacking compared to pathogenic Arcobacter.

Therefore, at first, it was explored that the diversity and abundance of the genus Arcobacter in abalones, an important fishery resource inhabiting shallow water environments, in order to gain knowledge on Arcobacter spp. in coastal invertebrates. Also, isolation of Arcobacter strains was attempted using a newly established method and an already established one. Second, the genomic information of Arcobacter sp. LA11 isolated from abalones was analyzed to estimate the relationships between Arcobacter spp.

参考文献

Altekruse, S.F., Stern, N.J., Fields, P.I. and Swerdlow, D.L. (1999) Campylobacter jejuni—an emerging foodborne pathogen. Emerg. Infect. Dis. 5:28–35.

Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919–1925.

Atabay, H.I. and Corry, J.E. (1997) The prevalence of campylobacters and arcobacters in broiler chickens. J. Appl. Microbiol. 83:619–626.

Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., Formsma, K., Gerdes, S., Glass, E.M., Kubal, M., Meyer, F., Olsen, G.J., Olson, R., Osterman, A.L., Overbeek, R.A., McNeil, L.K., Paarmann, D., Paczian, T., Parrello, B., Pusch, G.D., Reich, C., Stevens, R., Vassieva, O., Vonstein, V., Wilke, A. and Zagnitko, O. (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics. 9:75.

Berendt, U., Haverkamp, T., Prior, A. and Schwenn, J.D. (1995) Reaction mechanism of thioredoxin: 3'- phospho-adenylylsulfate reductase investigated by site-directed mutagenesis. Eur. J. Biochem. 233:347–356.

Bick, J.A., Dennis, J.J., Zylstra, G.J., Nowack, J. and Leustek, T. (2000) Identification of a new class of 5'- adenylylsulfate (APS) reductases from sulfate-assimilating bacteria. J. Bacteriol. 182:135–142.

Blaser, M. J., Perez-Perez, G.I., Kleanthous, H., Cover, T.L., Peek, R.M., Chyou, P.H., Stemmermann, G.N. and Nomura, A. (1995) Infection with Helicobacter pylori strains possessing cagA is associated with an increased risk of developing adenocarcinoma of the stomach. Cancer. Res. 55:2111–2115.

Blaser, M. J. (1998) Helicobacter pylori and gastric diseases. BMJ. 316:1507–1510.

Bork, C., Schwenn, J.D. and Hell, R. (1998) Isolation and characterization of a gene for assimilatory sulfite reductase from Arabidopsis thaliana. Gene. 212:147–53.

Brightwell, G., Mowat, E., Clemens, R., Boerema, J., Pulford, D.J. and On, S.L. (2007) Development of a multiplex and real time PCR assay for the specific detection of Arcobacter butzleri and Arcobacter cryaerophilus. J. Microbiol. Methods. 68:318–325.

Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K. and Madden, T. L. (2009) BLAST+: architecture and applications. BMC bioinformatics. 10:421.

Christie, W.W. and Han, X. (2012) Lipids: their structures and occurrence, p. 3-19. Lipid Analysis (Fourth Edition). Elsevier, Netherlands.

Collado, L., Cleenwerck, I., Van Trappen, S., De Vos, P. and Figueras, M.J. (2009a) Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int. J. Syst. Evol. Microbiol. 59:1391–1396.

Collado, L., Guarro, J. and Figueras, M.J. (2009b) Prevalence of Arcobacter in meat and shellfish. J. Food. Prot. 72:1102–1106.

Collado, L. and Figueras, M.J. (2011) Taxonomy, Epidemiology, and Clinical Relevance of the Genus Arcobacter. Clin. Microbiol. Rev. 24:174–192.

Collado, L., Levican, A., Perez, J. and Figueras, M.J. (2011) Arcobacter defluvii sp. nov., isolated from sewage samples. Int. J. Syst. Evol. Microbiol. 61:2155–2161.

De Smet, S., Vandamme, P., De Zutter, L., On, S.L., Douidah, L. and Houf, K. (2011) Arcobacter trophiarum sp. nov., isolated from fattening pigs. Int. J. Syst. Evol. Microbiol. 61:356–361.

Diéguez, A.L., Balboa, S., Magnesen, T. and Romalde, J.L. (2017) Arcobacter lekithochrous sp. nov., isolated from a molluscan hatchery. Int. J. Syst. Evol. Microbiol. 67:1327–1332.

Donachie, S.P., Bowman, J.P., On, S.L. and Alam, M. (2005) Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 55:1271–1277.

Dramsi, S., Magnet, S., Davison, S. and Arthur, M. (2008) Covalent attachment of proteins to peptidoglycan. FEMS Microbiol. Rev. 32:307–320.

Dubilier, N., Bergin, C, and Lott, C. (2008) Symbiotic diversity in marine animals: The art of harnessing chemosynthesis. Nat. Rev. Microbiol. 6:725–740.

Ernst, P. B. and Gold, B. D. (2000) The disease spectrum of Helicobacter pylori: the immunopathogenesis of gastroduodenal ulcer and gastric cancer. Annu. Rev. Microbiol. 54:615–640.

Ferrera, I., Longhorn, S., Banta, A.B., Liu, Y., Preston, D. and Reysenbach, A.L. (2007) Diversity of 16S rRNA gene, ITS region and aclB gene of the Aquificales. Extremophiles. 11:57–64.

Fera, M.T., Maugeri, T.L., Gugliandolo, C., La Camera, E., Lentini, V., Favaloro, A., Bonanno, D. and Carbone, M. (2008) Induction and resuscitation of viable nonculturable Arcobacter butzleri cells. Appl. Environ. Microbiol. 74:3266–3268.

Fera, M.T., Gugliandolo, C., Lentini, V., Favaloro, A., Bonanno, D., La Camera, E. and Maugeri, T.L. (2010) Specific detection of Arcobacter spp. in estuarine waters of Southern Italy by PCR and fluorescent in situ hybridization. Lett. Appl. Microbiol. 50:65–70.

Figueras, M.J., Collado, L., Levican, A., Perez, J., Solsona, M.J. and Yustes, C. (2011a) Arcobacter molluscorum sp. nov., a new species isolated from shellfish. Syst. Appl. Microbiol. 34:105–109.

Figueras, M.J., Levican, A., Collado, L., Inza, M.I. and Yustes, C. (2011b) Arcobacter ellisii sp. nov., isolated from mussels. Syst. Appl. Microbiol. 34:414–418.

Fujiyoshi, S., Tateno, H., Watsuji, T., Yamaguchi, H., Fukushima, D., Mino, S., Sugimura, M., Sawabe, T., Takai, K., Sawayama, S. and Nakagawa, S. (2015) Effects of hemagglutination activity in the serum of a deep-sea vent endemic crab, Shinkaia Crosnieri, on non-symbiotic and symbiotic bacteria. Microbes Environ. 30:228–234.

Gilbreath, J.J., Cody, W.L., Merrell, D.S. and Hendrixson, D.R. (2011) Change is good: variations in common biological mechanisms in the Epsilonproteobacterial genera Campylobacter and Helicobacter. Microbiol. Mol. Biol. Rev. 75:84–132.

González, A., Bayas Morejón, I.F. and Ferrús, M.A. (2017) Isolation, molecular identification and quinolone-susceptibility testing of Arcobacter spp. isolated from fresh vegetables in Spain. Food Microbiol. 65:279–283.

Haddad, A., Camacho, F., Durand, P. and Cary, S.C. (1995) Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl. Environ. Microbiol. 61:1679–1687.

Hamann, E., Gruber-Vodicka, H., Kleiner, M., Tegetmeyer, H.E., Riedel, D., Littmann, S., Chen, J.W., Milucka, J., Viehweger, B., Becker, K.W., Dong, X.L., Stairs, C.W., Hinrichs, K.U., Brown, M.W., Roger, A.J. and Strous, M. (2016) Environmental Breviatea harbour mutualistic Arcobacter epibionts. Nature. 534:254–258.

Harmon, K.M. and Wesley, I.V. (1996) Identification of Arcobacter isolates by PCR. Lett. Appl. Microbiol. 23:241–244.

Hernandez, D., François, P., Farinelli, L., Osterås, M. and Schrenzel, J. (2008) De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome. Res. 18:802–809.

Ho, H.T., Lipman, L.J. and Gaastra, W. (2006) Arcobacter, what is known and unknown about a potential foodborne zoonotic agent! Vet. Microbiol. 115:1–13.

Houf, K., Tutenel, A., De Zutter, L., Van Hoof, J. and Vandamme, P. (2000) Development of a multiplex PCR assay for the simultaneous detection and identification of Arcobacter butzleri, Arcobacter cryaerophilus and Arcobacter skirrowii. FEMS Microbiol. Lett. 193:89–94.

Houf, K., De Zutter, L., Van Hoof, J. and Vandamme, P. (2002) Assessment of the genetic diversity among Arcobacters isolated from poultry products by suing two PCR-based typing methods. Appl. Environ. Microbiol. 68:2172–2178.

Houf, K., On, S.L., Coenye, T., Mast, J., Van Hoof, J. and Vandamme, P. (2005) Arcobacter cibarius sp. nov., isolated from broiler carcasses. Int. J. Syst. Evol. Microbiol. 55:713–717.

Houf, K., On, S.L., Coenye, T., Debruyne, L., De Smet, S. and Vandamme, P. (2009) Arcobacter thereius sp. nov., isolated from pigs and ducks. Int. J. Syst. Evol. Microbiol. 59:2599–2604.

Huber, T., Faulkner, G. and Hugenholtz, P. (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics. 20:2317–2319.

Hügler, M., Wirsen, C.O., Fuchs, G., Taylor, C.D. and Sievert, S.M. (2005) Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria. J. Bacteriol. 187:3020–3027.

Hume, M.E., Harvey, R.B., Stanker, L.H., Droleskey, R.E., Poole, T.L. and Zhang, H.B. (2001) Genotypic variation among arcobacter isolates from a farrow-to-finish swine facility. J. Food Prot. 64:645–651.

Janssen, R., Krogfelt, K.A., Cawthraw, S.A., van Pelt, W., Wagenaar, J.A. and Owen, R.J. (2008) Hostpathogen interactions in Campylobacter infections: the host perspective. Clin. Microbiol. Rev. 21:505–518.

Kachlany, S.C., Planet, P.J., Bhattacharjee, M.K., Kollia, E., DeSalle, R., Fine, D.H. and Figurski, D.H. (2000) Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea. J. Bacteriol. 182:6169–76.

Kepner, R.L. Jr and Pratt, J.R. (1994) Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present. Microbiol. Rev. 58:603–615.

Khan, I.U.H., Cloutier, M., Libby, M., Lapen, D.R., Wilkes, G. and Topp, E. (2017) Enhanced singletube multiplex PCR assay for detection and identification of six Arcobacter species. J. Appl. Microbiol. 123:1522–1532.

Kiehlbauch, J.A., Brenner, D.J., Nicholson, M.A., Baker, C.N., Patton, C.M., Steigerwalt, A.G. and Wachsmuth, I.K. (1991) Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness. J. Clin. Microbiol. 29:376–85.

Kim, H.M., Hwang, C.Y. and Cho, B.C. (2010) Arcobacter marinus sp. nov. Int. J. Syst. Evol. Microbiol. 60:531–536.

Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions throughcomparative studies ofnucleotide sequences. J. Mol. Evol. 16:111–120.

Konkel, M.E., Kim, B.J., Rivera-Amill, V. and Garvis, S.G. (1999) Bacterial secreted proteins are required for the internalization of Campylobacter jejuni into cultured mammalian cells. Mol. Microbiol. 32:691–701.

König, S., Gros, O., Heiden, S.E., Hinzke, T., Thürmer, A., Poehlein, A., Meyer, S., Vatin, M., Mbéguié-A-Mbéguié, D., Tocny, J., Ponnudurai, R., Daniel, R., Becher, D., Schweder, T. and Markert, S. (2016) Nitrogen fixation in a chemoautotrophic lucinid symbiosis. Nat. Microbiol. 2:16193.

Krebs, J. E., Gale, A. N., Sontag, T. C., Keyser, V. K., Peluso, E. M., and Newman, J. D. (2013) A webbased method to calculate average amino acid identity (AAI) between prokaryotic genomes. BioTechniques.

Kumar, S., Stecher, G. and Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol. Biol. Evol. 33:1870–1874.

Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C. and Salzberg, S. L. (2004) Versatile and open software for comparing large genomes. Genome Biol. 5:R12.

Lagesen, K., Hallin, P., Rødland, E.A., Staerfeldt, H-H., Rognes, T. and Ussery, D.W. (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic. Acids. Res. 35:3100–3108.

Laishram, M., Rathlavath, S., Lekshmi, M., Kumar, S. and Nayak, B.B. (2016) Isolation and characterization of Arcobacter spp. from fresh seafood and the aquatic environment. Int. J. Food. Microbiol. 232:87–89.

Le Faou, A., Rajagopal, B.S., Daniels, L. and Fauque, G. (1990) Thiosulfate, polythionates and elemental sulfur assimilation and reduction in the bacterial world. FEMS Microbiol. Rev. 6:351–381.

Lex, A., Gehlenborg, N., Strobelt, H., Vuillemot, R. and Pfister, H. (2014) UpSet: Visualization of intersecting sets. IEEE Trans. Vis. Comput. Graph. 20:1983–1992.

Levican, A., Collado, L., Aguilar, C., Yustes, C., Diéguez, A.L., Romalde, J.L. and Figueras, M.J. (2012) Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish. Syst. Appl. Microbiol. 35:133–138.

Levican, A., Collado, L. and Figueras, M.J. (2013) Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage. Syst. Appl. Microbiol. 36:22–27.

Levican, A., Collado, L., Yustes, C., Aguilar, C. and Figueras, M.J. (2014) Higher water temperature and incubation under aerobic and microaerobic conditions increase the recovery and diversity of Arcobacter spp. from shellfish. Appl. Environ. Microbiol. 80:385–391.

Levican, A., Rubio-Arcos, S., Martinez-Murcia, A., Collado, L. and Figueras, M.J. (2015) Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment. Syst. Appl. Microbiol. 38:30–35.

Macey, B. M. and Coyne, V. E. (2006) Colonization of the gastrointestinal tract of the farmed South African abalone Haliotis midae by the probionts Vibrio midae SY9, Cryptococcus sp. SS1, and Debaryomyces hansenii AY1. Mar. Biotechnol. 8:246–259.

Madigan, T.L., Bott, N.J., Torok, V.A., Percy, N.J., Carragher, J.F., de Barros Lopes, M.A. and Kiermeier, A. (2014) A microbial spoilage profile of half shell Pacific oysters (Crassostrea gigas) and Sydney rock oysters (Saccostrea glomerata). Food Microbiol. 38:219–227.

McClung, C.R., Patriquin, D.G. and Davis, R.E. (1983) Campylobacter nitrofigilis sp. nov., a nitrogenfixing bacterium associated with roots of Spartina alterniflora Loisel. Int. J. Syst. Bacteriol. 33:605–612.

Medina, G., Neves, P., Flores-Martin, S., Manosalva, C., Andaur, M., Otth, C., Lincopan, N. and Fernández, H. (2019) Transcriptional analysis of flagellar and putative virulence genes of Arcobacter butzleri as an endocytobiont of Acanthamoeba castellanii. Arch. Microbiol. 201:1075–1083.

Meier-Kolthoff, J.P., Auch, A.F., Klenk, H.P. and Göker, M. (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics. 14:60.

Merga, J.Y., Leatherbarrow, A.J., Winstanley, C., Bennett, M., Hart, C.A., Miller, W.G. and Williams, N.J. (2011) Comparison of Arcobacter isolation methods, and diversity of Arcobacter spp. in Cheshire, United Kingdom. Appl. Environ. Microbiol. 77:1646–1650.

Meziti, A., Mente, E. and Kormas, K.A. (2012) Gut bacteria associated with different diets in reared Nephrops norvegicus. System. Appl. Microbiol. 35:473–482.

Miller, W.G., Parker, C.T., Rubenfield, M., Mendz, G.L., Wosten, M.M., Ussery, D.W., Stolz, J.F., Binnewies, T.T., Hallin, P.F., Wang, G., Malek, J.A., Rogosin, A., Stanker, L.H. and Mandrell, R.E. (2007) The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One. 2:e1358.

Moreno, Y., Botella, S., Alonso, J.L., Ferrús, M.A., Hernández, M. and Hernández, J. (2003) Specific detection of Arcobacter and Campylobacter strains in water and sewage by PCR and fluorescent in situ hybridization. Appl. Environ. Microbiol. 69:1181–1186.

Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A. C. and Kanehisa, M. (2007). KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic acids research. 35:182–185.

Mottola, A., Bonerba, E., Figueras, M.J., Pérez-Cataluña, A., Marchetti, P., Serraino, A., Bozzo, G., Terio, V., Tantillo, G. and Di Pinto, A. (2016) Occurrence of potentially pathogenic arcobacters in shellfish. Food Microbiol. 57:23–27.

Nakagawa, S. and Takaki, Y. (2009) Nonpathogenic epsilonproteobacteria. e LS. DOI: 10.1002/9780470015902.a0021895

Neill, S.D., Campbell, J.N., O’Brien, J.J., Weatherup, S.T.C. and Ellis, W.A. (1985) Taxonomic Position of Campylobacter cryaerophila sp. nov. Int. J. Syst. Bacteriol. 35:342–356.

Nicholls, P. (1975) The effect of sulfide on cytochrome aa3. Isosteric and allosteric shifts of the reduced α‐ peak. Biochim. Biophys. Acta. 396:24–35.

On, S.L., Harrington, C.S. and Atabay, H.I. (2003) Differentiation of Arcobacter species by numerical analysis of AFLP profiles and description of a novel Arcobacter from pig abortions and turkey faeces. J. Appl. Microbiol. 95:1096–1105.

On, S.L., Atabay, H.I., Amisu, K.O., Coker, A.O. and Harrington, C.S. (2004) Genotyping and genetic diversity of Arcobacter butzleri by amplified fragment length polymorphism (AFLP) analysis. Lett. Appl. Microbiol. 39:347–352.

Ootsubo, M., Shimizu, T., Tanaka, R., Sawabe, T., Tajima, K. and Ezura, Y. (2003) Seven-hour fluorescence in situ hybridization technique for enumeration of Enterobacteriaceae in food and environmental water sample. J. Appl. Microbiol. 95:1182–1190.

Ottaviani, D., Mosca, F., Chierichetti, S., Tiscar, P. G. and Leoni, F. (2017). Genetic diversity of Arcobacter isolated from bivalves of Adriatic and their interactions with Mytilus galloprovincialis hemocytes. Microbiologyopen. 6: doi:10.1002/mbo3.400.

Overbeek, R., Begley, T., Butler, R.M., Choudhuri, J.V., Chuang, H.Y., Cohoon, M., de Crécy-Lagard, V., Diaz, N., Disz, T., Edwards, R., Fonstein, M., Frank, E.D., Gerdes, S., Glass, E.M., Goesmann, A., Hanson, A., Iwata-Reuyl, D., Jensen, R., Jamshidi, N., Krause, L., Kubal, M., Larsen, N., Linke, B., McHardy, A.C., Meyer, F., Neuweger, H., Olsen, G., Olson, R., Osterman, A., Portnoy, V., Pusch, G.D., Rodionov, D.A., Rückert, C., Steiner, J., Stevens, R., Thiele, I., Vassieva, O., Ye, Y., Zagnitko, O. and Vonstein, V. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic. Acids. Res. 33:5691–5702.

Park, S., Jung, Y.T., Kim, S. and Yoon, J.H. (2016) Arcobacter acticola sp. nov., isolated from seawater on the East Sea in South Korea. J. Microbiol. 54:655–659.

Parsonnet, J., Friedman, G.D., Vandersteen, D.P., Chang, Y., Vogelman, J.H., Orentreich, N. and Sibley,R.K. (1991) Helicobacter pylori infection and the risk of gastric carcinoma. N. Engl. J. Med. 325:1127–1131.

Parsonnet, J., Hansen, S., Rodriguez, L., Gelb, A.B., Warnke, R.A., Jellum, E., Orentreich, N., Vogelman, J.H. and Friedman, G.D. (1994) Helicobacter pylori infection and gastric lymphoma. N. Engl. J. Med. 330:1267–1271.

Patyal, A., Rathore, R. S., Mohan, H. V., Dhama, K. and Kumar, A. (2011) Prevalence of Arcobacter spp. in humans, animals and foods of animal origin including sea food from India. Transbound. Emerg. Dis. 58:402-410.

Perez-Cataluña, A., Salas-Masso, N. and Figueras, M.J. (2018a) Arcobacter canalis sp. nov., isolated from a water canal contaminated with urban sewage. Int. J. Syst. Evol. Microbiol. 68:1258–1264.

Pérez-Cataluña, A., Salas-Massó, N. and Figueras, M.J. (2018b) Arcobacter lacus sp. nov. and Arcobacter caeni sp. nov., two novel species isolated from reclaimed water. Syst. Appl. Microbiol. 69:3326–3331.

Pérez-Cataluña, A., Salas-Massó, N., Diéguez, A.L., Balboa, S., Lema, A., Romalde, J.L. and Figueras, M.J. (2018c) Revisiting the taxonomy of the genus Arcobacter: getting order from the chaos. Front. Microbiol.9:2077.

Petersen, J.M., Kemper, A., Gruber-Vodicka, H., Cardini, U., van der Geest, M., Kleiner, M., Bulgheresi, S., Mußmann, M., Herbold, C., Seah, B.K., Antony, C.P., Liu, D., Belitz, A. and Weber, M. (2016) Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nat. Microbiol. 2:16195.

Pinto, R., Tang, Q.X., Britton, W.J., Leyh, T.S. and Triccas, J.A. (2004) The Mycobacterium tuberculosis cysD and cysNC genes form a stress-induced operon that encodes a tri-functional sulfate-activating complex. Microbiology. 150:1681–1686.

Porat, I., Waters, B.W., Teng, Q. and Whitman, W.B. (2004) Two biosynthetic pathways for aromatic amino acids in the archaeon Methanococcus maripaludis. J. Bacteriol. 186:4940–4950.

Potasman, I., Paz, A. and Odeh, M. (2002) Infectious outbreaks associated with bivalve shellfish consumption: a worldwide perspective. Clin. Infect. Dis. 35:921–928.

Qin, Q.L., Xie, B.B., Zhang, X.Y., Chen, X.L., Zhou, B.C., Zhou, J., Oren, A. and Zhang, Y.Z. (2014) A proposed genus boundary for the prokaryotes based on genomic insights. J. Bacteriol. 196:2210–2215.

Rathlavath, S., Kumar, S. and Nayak, B.B. (2017a) Comparative isolation and genetic diversity of Arcobacter sp. from fish and the coastal environment. Lett. Appl. Microbiol. 65:42–49.

Rathlavath, S., Kohli, V., Singh, A.S., Lekshmi, M., Tripathi, G., Kumar, S. and Nayak, B.B. (2017b) Virulence genotypes and antimicrobial susceptibility patterns of Arcobacter butzleri isolated from seafood and its environment. Int. J. Food Microbiol. 263:32–37.

Richter, M., Rosselló-Móra, R., Oliver Glöckner, F. and Peplies, J. (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics. 32:929–931.

Roalkvam, I., Drønen, K., Stokke, R., Daae, F.L., Dahle, H. and Steen, I.H. (2015) Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front. Microbiol. 6:987.

Roller, C., Wagner, M., Amann, R., Ludwig, W. and Schleifer, K.H. (1994) In situ probing of Grampositive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology. 140:2849–2858.

Romero, J., García-Varela, M., Laclette, J.P. and Espejo, R.T. (2002) Bacterial 16S rRNA gene analysis revealed that bacteria related to Arcobacter spp. constitute an abundant and common component of the oyster microbiota (Tiostrea chilensis). Microb. Ecol. 44:365–371.

Ruiz, N. (2008) Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 105:15553–15557.

Salas-Massó, N., Andree, K.B., Furones, M.D. and Figueras, M.J. (2016) Enhanced recovery of Arcobacter spp. using NaCl in culture media and re-assessment of the traits of Arcobacter marinus and Arcobacter halophilus isolated from marine water and shellfish. Sci. Total Environ. 566–567:1355–1361.

Salas-Massó, N., Figueras, M.J., Andree, K.B. and Furones, M.D. (2018) Do the Escherichia coli European Union shellfish safety standards predict the presence of Arcobacter spp., a potential zoonotic pathogen? Sci. Total Environ. 624:1171–1179.

Sasi Jyothsna, T.S., Rahul, K., Ramaprasad, E.V., Sasikala, Ch. and Ramana, Ch.V. (2013) Arcobacter anaerophilus sp. nov., isolated from an estuarine sediment and emended description of the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 63:4619–4625.

Sawabe, T., Setoguchi, N., Inoue, S., Tanaka, R., Ootsubo, M., Yoshimizu, M. and Ezura, Y. (2003) Acetic acid production of Vibrio halioticoli from alginate: a possible role for establishment of abalone-V. halioticoli association. Aquaculture. 219:671–679.

Schattner, P., Brooks, A.N. and Lowe, T.M. (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic. Acids. Res. 33:686–689.

Schmitt, C.K., Darnell, S.C., Tesh, V.L., Stocker, B.A. and O'Brien, A.D. (1994) Mutation of flgM attenuates virulence of Salmonella typhimurium, and mutation of fliA represses the attenuated phenotype. J. Bacteriol. 176:368–377.

Schreiner, H.C., Sinatra, K., Kaplan, J.B., Furgang, D., Kachlany, S.C., Planet, P.J., Perez, B.A., Figurski, D.H and Fine, D.H. (2003) Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model. Proc. Natl. Acad. Sci. U. S. A. 100:7295–7300.

Šilha, D., Šilhová-Hrušková, L. and Vytřasová, J. (2015) Modified isolation method of Arcobacter spp. from different environmental and food samples. Folia. Microbiol. 60:515–521.

Skirrow, M. B. and Blaser, M. J. (1995) Campylobacter jejuni, p. 825–848. In Blaser, M. J., Smith, P. D., Ravdin, J. I., Greenberg, H. B. and Guerrant, R. L. (eds.), Infections of the gastrointestinal tract. Raven Press, New York, NY.

Snaidr, J., Amann, R., Huber, I., Ludwig, W. and Schleifer, K.H. (1997) Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 63:2884–2896.

Stackebrandt, E. and Goebel, B.M. (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846–849.

Suzuki, Y., Sasaki, T., Suzuki, M., Nogi, Y., Miwa, T., Takai, K., Nealson, K.H. and Horikoshi, K. (2005) Novel Chemoautotrophic Endosymbiosis between a Member of the Epsilonproteobacteria and the Hydrothermal-Vent Gastropod Alviniconcha aff. hessleri (Gastropoda: Provannidae) from the Indian Ocean. Appl. Environ. Microbiol. 71:5440–5450.

Suzuki, Y., Kojima, S., Sasaki, T., Suzuki, M., Utsumi, T., Watanabe, H., Urakawa, H., Tsuchida, S., Nunoura, T., Hirayama, H., Takai, K., Nealson, K.H. and Horikoshi, K. (2006) Host-symbiont relationships in hydrothermal vent gastropods of the genus Alviniconcha from the southwest pacific. Appl. Environ. Microbiol. 72:1388–1393.

Swisher, S.C. and Barbati, A.J. (2007) Helicobacter pylori strikes again: gastric mucosa-associated lymphoid tissue (MALT) lymphoma. Gastroenterol. Nurs. 30:348–354.

Talley, N.J., Zinsmeister, A.R., Weaver, A., DiMagno, E.P., Carpenter, H.A., Perez-Perez, G.I. and Blaser, M.J. (1991) Gastric adenocarcinoma and Helicobacter pylori infection. J. Natl. Cancer Inst. 83:1734–1739.

Tan, B.K., Bogdanov, M., Zhao, J., Dowhan, W., Raetz, C.R. and Guan, Z. (2012) Discovery of a cardiolipin synthase utilizing phosphatidylethanolamine and phosphatidylglycerol as substrates. Proc. Natl. Acad. Sci. U. S. A. 109:16504–16509.

Tanaka, R., Ootsubo, M., Sawabe, T., Ezura, Y. and Tajima, K. (2004) Biodiversity and in situ abundance of gut microflora of abalone (Haliotis discus hannai) determined by culture-independent techniques. Aquaculture. 241:453–463.

Tanaka, R., Cleenwerck, I., Mizutani, Y., Iehata, S., Bossier, P. and Vandamme, P. (2017) Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea. Int. J. Syst. Evol. Microbiol. 67:3050–3056.

Teeling, H., Fuchs, B.M., Becher, D., Klockow, C., Gardebrecht, A., Bennke, C.M., Kassabgy, M., Huang, S., Mann, A.J., Waldmann, J., Weber, M., Klindworth, A., Otto, A., Lange, J., Bernhardt, J., Reinsch, C., Hecker, M., Peplies, J., Bockelmann, F.D., Callies, U., Gerdts, G., Wichels, A., Wiltshire, K.H., Glöckner, F.O., Schweder, T. and Amann, R. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science. 336:608–611.

Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic. Acids. Res. 22:4673–4680.

Tokuda, G., Yamada, A., Nakano, K., Arita, N.O. and Yamasaki, H. (2008) Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep-sea hydrothermal vent shrimp. Mar. Ecol. 29:106–114.

Urakawa, H., Dubilier, N., Fujiwara, Y., Cunningham, D.E., Kojima, S. and Stahl, D.A. (2005) Hydrothermal vent gastropods from the same family (Provannidae) harbour e- and gamma-proteobacterial endosymbionts. Environ. Microbiol. 7:750–754.

Vandamme, P., Falsen, E., Rossau, R., Hoste, B., Segers, P., Tytgat, R. and De Ley, J. (1991) Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Bacteriol. 41:88–103.

Vandamme, P., Vancanneyt, M., Pot, B., Mels, L., Hoste, B., Dewettinck, D., Vlaes, L., Van Den Borre, C., Higgins, R., Hommez, J., Kersters, K., Butzler, J.P. and Goossens, H. (1992) Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 42:344–356.

Vandamme, P., Giesendorf, B.A., van Belkum, A., Pierard, D., Lauwers, S., Kersters, K., Butzler, J.P., Goossens, H. and Quint, W.G. (1993) Discrimination of epidemic and sporadic isolates of Arcobacter butzleri by polymerase chainreaction-mediated DNA fingerprinting. J. Clin. Microbiol. 31:3317–3319.

Vicente-Martins, S., Oleastro, M., Domingues, F.C. and Ferreira, S. (2018) Arcobacter spp. at retail food from Portugal: Prevalence, genotyping and antibiotics resistance. Food Control. 85:107–112.

Whiteduck-Léveillée, K., Whiteduck-Léveillée, J., Cloutier, M., Tambong, J.T., Xu R., Topp, E., Arts, M.T., Chao, J., Adam, Z., André Lévesque, C., Lapen, D.R., Villemur, R., Talbot, G. and Khan, I.U. (2015) Arcobacter lanthieri sp. nov., isolated from pig and dairy cattle manure. Int. J. Syst. Evol. Microbiol. 65:2709–2716.

Whiteduck-Léveillée, K., Whiteduck-Léveillée, J., Cloutier, M., Tambong, J.T., Xu, R., Topp, E., Arts, M.T., Chao, J., Adam, Z., Lévesque, C.A., Lapen, D.R., Villemur, R. and Khan, I.U. (2016) Identification, characterization and description of Arcobacter faecis sp. nov., isolated from a human waste septic tank. Syst. Appl. Microbiol. 39:93–99.

Wirsen, C.O., Sievert, S.M., Cavanaugh, C.M., Molyneaux, S.J., Ahmad, A., Taylor, L.T., DeLong, E.F. and Taylor, C.D. (2002) Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Appl. Environ. Microbiol. 68:316–325.

Zhang, Z., Yu, C., Wang, X., Yu, S. and Zhang, X.H. (2016) Arcobacter pacificus sp. nov., isolated from seawater of the South Pacific Gyre. Int. J. Syst. Evol. Microbiol. 66:542–547.

Zhang, X., Alter, T. and Gölz, G. (2019) Characterization of Arcobacter spp. isolated from retail seafood in Germany. Food microbiology. 82:254–258.

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