1. Renner SS, Ricklefs RE. Dioecy and its correlates in the flowering plants.
Am J Bot. 1995;82:596–606.
2. Weiblen GD, Oyama RK, Donoghue MJ. Phylogenetic analysis of dioecy in
monocotyledons. Am Nat. 2000;155:46–58.
3. Renner SS. The relative and absolute frequencies of angiosperm sexual
systems: dioecy, monoecy, gynodioecy, and an updated online database.
Am J Bot. 2014;101:1588–96.
4. Heilbuth JC. Lower species richness in dioecious Clades. Am Nat.
2000;156(3):221–41.
5. Kafer J, Marais GAB, Pannell JR. On the rarity of dioecy in flowering plants.
Mol Ecol. 2017;26:1225–41.
6. Badouin H, Velt A, Gindraud F, Flutre T, Marais GA. The wild grape genome
sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication. Genome Biol. 2020;21(1):223–223.
7. Masuda K, Ikeda Y, Matsuura T, Kawakatsu T, Tao R, Kubo Y, Ushijima K,
Henry IM, Akagi T. Reinvention of hermaphroditism via activation of a
RADIALIS-like gene in hexaploid persimmon. Nat plants. 2022;8:217–24.
8. Akagi T, Henry IM, Tao R, Comai L. A Y-chromosome-encoded small RNA
acts as a sex determinant in persimmons. Science. 2014;346:646–50.
9. Li JR, Sun P, Han WJ, Li FD, Fu JM, Diao SF. Morphological key period study
on floral sex differentiation in pollination-constant and non-astringent
persimmon ‘Zenjimaru.’ Acta Horticulturae Sinica. 2016;43:451–61 (In
Chinese with English abstract).
10. Akagi T, Henry IM, Kawai T, Comai L, Tao R. Epigenetic regulation of
the sex determination gene MeGI in polyploid persimmon. Plant Cell.
2016;28:2905–15.
11. Wang L, Li H, Sun P, Suo Y, Han W, Diao S, Mai Y, Li F, Fu J. Efects of plant
growth regulators, soil moisture contents, and carbon/nitrogen ratios on
sex diferentiation in Persimmon (Diospyros kaki Thunb.) Flowers. J Plant
Growth Regul. 2021;40:1121–38.
12. Li H, Wang L, Mai Y, Han W, Suo Y, Diao S, Sun P, Fu J. Phytohormone and
integrated mRNA and miRNA transcriptome analyses and differentiation of male between hermaphroditic floral buds of andromonoecious
Diospyros kaki Thunb. BMC Genomics. 2021;22:203.
13. Henry IM, Akagi T, Tao R, Comai L. One hundred ways to invent the sexes:
theoretical and observed paths to dioecy in plants. Annu Rev Plant Biol.
2018;69(1):553–75.
14. Masuda K, Akagi T. Sexual system and its evolution. In: Tao R, Luo Z, editors. The Persimmon Genome. Cham: Springer Nature Switzerland AG;
2022. p. 97–108.
15. Sun P, Fu JM. A BioNano optical mapping-assisted chromosomal genome
assembly of Diospyros oleifera. figshare. Dataset. 2022a. https://doi.org/10.
6084/m9.figshare.20101664.v3
16. Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry
IM. The persimmon genome reveals clues to the evolution of a
lineage-specific sex determination system in plants. PLoS Genet.
2020;16(2):e1008566.
17. Akagi T, Kawai T, Tao R. A male determinant gene in diploid dioecious
Diospyros, OGI, is required for male flower production in monoecious
individuals of Oriental persimmon (D. kaki). Sci Hortic-Amsterdam.
2016;213:243–51.
18. Gong Z, Morales-Ruiz T, Ariza RR, Roldan-Arjona T, David L, Zhu JK. ROS1, a
repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA
glycosylase/lyase. Cell. 2002;111:803–14.
19. Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic Acids Res. 2000;28:27–30.
20. Kanehisa M. Toward understanding the origin and evolution of cellular
organisms. Protein Sci. 2019;28:1947–51.
21. Kanehisa M, Furumichi M, Sato Y, Kawashima M, Ishiguro-Watanabe M.
KEGG for taxonomy-based analysis of pathways and genomes. Nucleic
Acids Res. 2023;51:D587–92.
22. Crossman A, Charlesworth D. Breakdown of dioecy: models where males
acquire cosexual functions. Evolution. 2014;68(2):426–40.
23. Perbal MC, Haughn G, Saedler H, Schwarz-Sommer Z. Non-cell-autonomous function of the Antirrhinum floral homeotic proteins DEFICIENS and
GLOBOSA is exerted by their polar cell-to-cell trafficking. Development.
1996;122(11):3433–41.
24. Müller NA, Kersten B, Montalvão APL, Mähler N, Bernhardsson C, Bräutigam K, Lorenzo ZC, Hoenicka H, Kumar V, Mader M, Pakull B, Robinson
KM, Sabatti M, Vettori C, Ingvarsson PK, Cronk Q, Street NR, Fladung M. A
Sun et al. BMC Plant Biology
25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. (2023) 23:606
single gene underlies the dynamic evolution of poplar sex determination. Nat plants. 2020;6:630–7.
Cossard GG, Gerchen JF, Li X, Cuenot Y, Pannell JR. The rapid dissolution of
dioecy by experimental evolution. Current Biol. 2021;31:1–7.
Massonnet M, Cochetel N, Minio A, et al. The genetic basis of sex determination in grapes. Nat Commun. 2020;11:2902.
VanBuren R, Zeng F, Chen C, Zhang J, Wai MC, Han J, Aryal R, Gschwend
AR, Wang J, Na JK, Huang L, Zhang L, Miao W, Gou J, Arro J, Guyot R,
Moore RC, Wang ML, Zee F, Charlesworth D, Moore PH, Yu Q, Ming R.
Origin and domestication of papaya Yh chromosome. Genome Res.
2015;25(4):524–33.
Wang L, Li H, Suo Y, Han W, Diao S, Mai Y, Wang Y, Yuan J, Ye L, Pu T,
Zhang Q, Sun P, Li F, Fu J. Effects of different chemicals on sexual regulation in persimmon (Diospyros kaki Thunb.) Flowers. Front Plant Sci.
2022;13:876086.
Gubler F, Kalla R, Roberts JK, Jacobsen JV. Gibberellin-regulated
expression of a myb gene in barley aleurone cells: evidence for Myb
transactivation of a high-pI alpha-amylase gene promoter. Plant Cell.
1995;7:1879–91.
Haseneyer G, Ravel C, Dardevet M, Balfourier F, Sourdille P, Charmet G,
Brunel D, Sauer S, Geiger HH, Graner A, Stracke S. High level of conservation between genes coding for the GAMYB transcription factor in barley
(Hordeum vulgare L.) and bread wheat (Triticum aestivum L.) collections.
Theor Appl Genet. 2008;117:321–31.
Gocal GFW, Poole AT, Gubler F, Watts RJ, Blundell C, King RW. Long-day
up-regulation of a GAMYB gene during Lolium temulentum inflorescence
formation. Plant Physiol. 1999;119:1271–8.
Murray F, Kalla R, Jacobsen J, Gubler F. A role for HvGAMYB in anther
development. Plant J. 2003;33:481–91.
Sun P, Li JR, Du GG, Han WJ, Fu JM, Diao SF, Suo YJ, Zhang Y, Li FD.
Endogenous phytohormone profiles in male and female floral buds of
the persimmons (Diospyros kaki Thunb.) during development. Sci HorticAmsterdam. 2017;218:213–21.
Li SZ, Sun P, Du GG, Wang LY, Li HW, Fu JM, Suo YJ, Han WJ, Diao SF, Mai
YN, Li FD. Transcriptome sequencing and comparative analysis between
male and female floral buds of the persimmon (Diospyros kaki Thunb.). Sci
Hortic-Amsterdam. 2019;246:987–97.
Preston JC, Hileman LC. Functional evolution in the plant SQUAMOSAPROMOTER BINDING PROTEIN-LIKE (SPL) gene family. Front Plant Sci.
2013;4:1–13.
Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D. The microRNAregulated SBP-Box transcription factor SPL3 is a direct upstream activator
of LEAFY, FRUITFULL, and APETALA1. Dev Cell. 2009;17:268–78.
Fan D, Wang X, Tang X, Ye X, Ren S, Wang D, Luo K. Histone H3K9 demethylase JMJ25 epigenetically modulates anthocyanin biosynthesis in
poplar. Plant J. 2018;96:1121–36.
Omidbakhshfard MA, Proost S, Fujikura U, Mueller-Roeber B. Growth-regulating factors (GRFs): a small transcription factor family with important
functions in plant biology. Mol Plant. 2015;8:998–1010.
Liang G, He H, Li Y, Wang F, Yu D. Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis. Plant Physiol.
2014;164:249–58.
Feder ME, Hofmann GE. Heat-shock proteins, molecular chaperones, and
the stress response: evolutionary and ecological physiology. Annu Rev
Physiol. 1999;61:243–82.
Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S. The
asparagus genome sheds light on the origin and evolution of a young Y
chromosome. Nat Commun. 2017;8:1279.
Harkess A, Huang K, Van der Hulst R, Tissen B, Caplan JL, Koppula A, Batish M, Meyers BC, Leebens-Mackb J. Sex determination by two Y-linked
genes in garden asparagus. Plant Cell. 2020;32:1790–6.
Manzanares C, Barth S, Thorogood D, Thorogood D, Byrne SL, Yates S,
Czaban A, Asp T, Yang B, Studer B. A gene encoding a DUF247 domain
protein cosegregates with the S self-Incompatibility locus in perennial
ryegrass. Molr Biol Evol. 2016;33(4):870–84.
Thorogood D, Yates S, Manzanares C, Skot L, Hegarty M, Blackmore T,
Barth S, Studer B. A novel multivariate approach to phenotyping and
association mapping of multi-locus gametophytic self-incompatibility
reveals S, Z, and other loci in a perennial ryegrass (Poaceae) population.
Front Plant Sci. 2017;8:1331.
Valleau WD. Inheritance of sex in the grape. Am Nat. 1915;597:554–64.
Page 18 of 18
46. Fu JM, Liu HM, Hu JJ, Liang YQ, Liang JJ, Wuyun TN, Tan XF. Five complete
chloroplast genome sequences from Diospyros: genome organization
and comparative analysis. PLoS ONE. 2017;11(7):e0159566.
47. Suo YJ, Sun P, Cheng HH, Han WJ, Diao SF, Li HW, Mai YN, Zhao X, Li FD, Fu
JM. A high-quality chromosomal genome assembly of Diospyros oleifera
Cheng. GigaScience. 2020;9:1–10.
48. Li H, Durbin R. Fast and accurate long-read alignment with BurrowsWheeler transform. Bioinformatics. 2010;26:589–95.
49. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 1000 genome project data processing subgroup. The
sequence alignment/map (SAM) format and SAMtools. Bioinformatics.
2009;25(6):2078–9.
50. Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K,
Li S, Yang H, Wang J, Wang J. De novo assembly of human genomes with
massively parallel short read sequencing. Genome Res. 2010;20:265–72.
51. Sun P, Fu JM. The Diospyros oleifera heterozygous and male unmapped
sequences. figshare. Dataset. 2022b. https://doi.org/10.6084/m9.figshare.
20407386.v1.
52. Slifer SH. PLINK: Key Functions for data analysis. Curr Protoc Hum Genet.
2018;97:59.
53. Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D.
Principal components analysis corrects for stratification in genome-wide
association studies. Nat Genet. 2006;38(8):904–9.
54. Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics
analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870–4.
55. Endelman JB. Ridge regression and other kernels for genomic selection
with R package rrBLUP. Plant Genome-US. 2011;4(3):250–5.
56. Shin J, Blay S, McNeney B, Graham J. LDheatmap: An R function for
graphical display of pairwise linkage disequilibria between single nucleotide polymorphisms. J Stat Softw. 2006;16:c03.
57. Mai Y, Diao S, Yuan J, Wang L, Suo Y, Li H, Han W, Wang Y, Ye L, Liu Y, et al.
Identification and analysis of MADS-box, WRKY, NAC, and SBP-box transcription factor families in Diospyros oleifera Cheng and their associations
with sex differentiation. Agronomy-basel. 2022;12:2100.
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Ready to submit your research ? Choose BMC and benefit from:
• fast, convenient online submission
• thorough peer review by experienced researchers in your field
• rapid publication on acceptance
• support for research data, including large and complex data types
• gold Open Access which fosters wider collaboration and increased citations
• maximum visibility for your research: over 100M website views per year
At BMC, research is always in progress.
Learn more biomedcentral.com/submissions
...
論文の公開元へ
