リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

大学・研究所にある論文を検索できる 「High-resolution spatiotemporal transcriptome analyses during cellularization of rice endosperm unveil the earliest gene regulation critical for aleurone and starchy endosperm cell fate specification」の論文概要。リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

コピーが完了しました

URLをコピーしました

論文の公開元へ論文の公開元へ
書き出し

High-resolution spatiotemporal transcriptome analyses during cellularization of rice endosperm unveil the earliest gene regulation critical for aleurone and starchy endosperm cell fate specification

Takafuji, Yoshinori Shimizu-Sato, Sae Ta, Kim Nhung Suzuki, Toshiya Nosaka-Takahashi, Misuzu Oiwa, Tetsuro Kimura, Wakana Katoh, Hirokazu Fukai, Mao Takeda, Shin Sato, Yutaka Hattori, Tsukaho 名古屋大学

2021.09

概要

The major tissues of the cereal endosperm are the starchy endosperm (SE) in the inner and the aleurone layer (AL) at the outer periphery. The fates of the cells that comprise these tissues are determined according to positional information; however, our understanding of the underlying molecular mechanisms remains limited. Here, we conducted a high-resolution spatiotemporal analysis of the rice endosperm transcriptome during early cellularization. In rice, endosperm cellularization proceeds in a concentric pattern from a primary alveolus cell layer, such that developmental progression can be defined by the number of cell layers. Using laser-capture microdissection to obtain precise tissue sections, transcriptomic changes were followed through five histologically defined stages of cellularization from the syncytial to 3-cell layer (3L) stage. In addition, transcriptomes were compared between the inner and the outermost peripheral cell layers. Large differences in the transcriptomes between stages and between the inner and the peripheral cells were found. SE attributes were expressed at the alveolus-cell-layer stage but were preferentially activated in the inner cell layers that resulted from periclinal division of the alveolus cell layer. Similarly, AL attributes started to be expressed only after the 2L stage and were localized to the outermost peripheral cell layer. These results indicate that the first periclinal division of the alveolus cell layer is asymmetric at the transcriptome level, and that the cell-fate-specifying positional cues and their perception system are already operating before the first periclinal division. Several genes related to epidermal identity (i.e., type IV homeodomain-leucine zipper genes and wax biosynthetic genes) were also found to be expressed at the syncytial stage, but their expression was localized to the outermost peripheral cell layer from the 2L stage onward. We believe that our findings significantly enhance our knowledge of the mechanisms underlying cell fate specification in rice endosperm.

この論文で使われている画像

参考文献

Abe M, Takahashi T, Komeda Y (2001) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. Plant J 26:487–494. https://doi.org/10.1046/j.1365-313X.2001.01047.x

Akiba T, Hibara KI, Kimura F, et al (2014) Organ fusion and defective shoot development in oni3 mutants of rice. Plant Cell Physiol 55:42–51. https://doi.org/10.1093/pcp/pct154

Akihiro T, Mizuno K, Fujimura T (2005) Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. Plant Cell Physiol 46:937–946. https://doi.org/10.1093/pcp/pci101

Bach L, Michaelson L V., Haslam R, et al (2008) The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proc Natl Acad Sci U S A 105:14727–14731. https://doi.org/10.1073/pnas.0805089105

Beaudoin F, Wu X, Li F, et al (2009) Functional characterization of the Arabidopsis β-ketoacyl- coenzyme a reductase candidates of the fatty acid elongase. Plant Physiol 150:1174–1191. https://doi.org/10.1104/pp.109.137497

Becraft PW (2007) Aleurone cell development. Plant Cell Monogr 8:45–56. https://doi.org/10.1007/7089_2007_108

Becraft PW (2001) Cell fate specification in the cereal endosperm. Semin Cell Dev Biol 12:387–394. https://doi.org/10.1006/scdb.2001.0268

Becraft PW, Asuncion-Crabb Y (2000) Positional cues specify and maitain aleurone cell fate in maize endosperm development. Development 127:4039–4048. https://doi.org/10.1007/978-1-4020-8854-4_27

Becraft PW, Li K, Dey N, Asuncion-Crabb Y (2002) The maize dek1 gene functions in embryonic pattern formation and cell fate specification. Development 129: 5217-5225.

Becraft PW, Stinard PS, McCarty DR (1996) CRINKLY4: A TNFR-Like Receptor Kinase involved in maize epidermal differentiation. Science (80- ) 273:1406–1409. https://doi.org/10.1126/science.273.5280.1406

Becraft PW, Yi G (2011) Regulation of aleurone development in cereal grains. J Exp Bot 62:1669–1675. https://doi.org/10.1093/jxb/erq372

Bosnes M, Weideman F, Olsen OA (1992) Endosperm differentiation in barley wild‐type and sex mutants. Plant J 2:661–674. https://doi.org/10.1111/j.1365-313X.1992.tb00135.x

Brown R, Lemmon B, Olsen O (1996a) Development of the endosperm in rice (Oryza sativa L.): Cellularization. J Plant Res 36:301–313. https://doi.org/10.1007/BF02344477

Brown RC, Lemmon BE (2007) The developmental biology of cereal endosperm. Plant Cell Monogr 8:1–20. https://doi.org/10.1007/7089_2007_106

Brown RC, Lemmon BE (2001) The cytoskeleton and spatial control of cytokinesis in the plant life cycle.Protoplasma 215:35–49. https://doi.org/10.1007/BF01280302

Brown RC, Lemmon BE, Nguyen H, Olsen OA (1999) Development of endosperm in Arabidopsis thaliana. Sex Plant Reprod 12:32–42. https://doi.org/10.1007/s004970050169

Brown RC, Lemmon BE, Olsen OA (1996b) Polarization predicts the pattern of cellularization in cereal endosperm. Protoplasma 192:168–177. https://doi.org/10.1007/BF01273889

Brown RC, Lemmon BE, Olsen OA (1994) Endosperm development in barley: Microtubule involvement in the morphogenetic pathway. Plant Cell 6:1241–1252. https://doi.org/10.1105/tpc.6.9.1241

Brown RC, Lemmon BE, Olsen OA (1996c) Development of the endosperm in rice (Oryza sativa L.): Cellularization. J Plant Res 109:301–313. https://doi.org/10.1007/bf02344477

Chen J, Zeng B, Zhang M, et al (2014) Dynamic transcriptome landscape of maize embryo and endosperm development. Plant Physiol 166:252–264. https://doi.org/10.1104/pp.114.240689

Collart MA (2016) The Ccr4-Not complex is a key regulator of eukaryotic gene expression. Wiley Interdiscip Rev RNA 7:438–454. https://doi.org/10.1002/wrna.1332

Drea S, Leader DJ, Arnold BC, et al (2005) Systematic spatial analysis of gene expression during wheat caryopsis development. Plant Cell 17:2172–2185. https://doi.org/10.1105/tpc.105.034058

Fuse T, Sasaki T, Yano M (2001) Ti-plasmid vectors useful for functional analysis of rice genes. Plant Biotechnol. 18:219–222. http://dx.doi.org/10.5511/plantbiotechnology.18.219

Gehring M, Satyaki PR (2017) Endosperm and imprinting, inextricably linked. Plant Physiol 173:143–154. https://doi.org/10.1104/pp.16.01353

Geisler-Lee J, Gallie DR (2005) Aleurone cell identity is suppressed following connation in maize kernels. Plant Physiol 139:204–212. https://doi.org/10.1104/pp.105.064295

Gontarek BC, Neelakandan AK, Wu H, Becraft PW (2016) NKD transcription factors are central regulators of maize endosperm development. Plant Cell 28:2916–2936. https://doi.org/10.1105/tpc.16.00609

Greene TW, Hannah LC (1998) Maize endosperm ADP-glucose pyrophosphorylase SHRUNKEN2 andBRITTLE2 subunit interactions. Plant Cell 10:1295–1306. https://doi.org/10.1105/tpc.10.8.1295

Gruis D, Guo H, Selinger D, et al (2006) Surface position, not signaling from surrounding maternal tissues, specifies aleurone epidermal cell fate in maize. Plant Physiol 141:898–909. https://doi.org/10.1104/pp.106.080945

Hara T, Katoh H, Ogawa D, et al (2015) Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development. Plant J 81:1–12. https://doi.org/10.1111/tpj.12705

Hattori T, Terada T, Hamasuna S (1995) Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis‐acting promoter elements required for regulation by abscisic acid and VP1. Plant J. 7:913–925

Hattori T, Terada T, Hamasuna ST (1994) Sequence and functional analyses of the rice gene homologous to the maize Vp1. Plant Mol Biol 24:805–810. https://doi.org/10.1007/BF00029862

Hibara K, Obara M, Hayashida E, et al (2009) The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice. Dev Biol 334:345–354. https://doi.org/10.1016/j.ydbio.2009.07.042

Hoshikawa K (1967a) Studies on the development of endosperm in rice : 1. Process of endosperm tissue formation. Japanese J Crop Sci 36:151–161. https://doi.org/10.1626/jcs.36.151

Hoshikawa K (1967b) Studies on the Development of Endosperm in Rice : 4. Differentiation and development of the aleurone lyaer. Jap J Crop Sci 216–220

Iida H, Yoshida A, Takada S (2019) ATML1 activity is restricted to the outermost cells of the embryo through post-transcriptional repressions. Dev 146:. https://doi.org/10.1242/dev.169300

Ishikawa R, Ohnishi T, Kinoshita Y, et al (2011) Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division. Plant J 65:798–806. https://doi.org/10.1111/j.1365-313X.2010.04466.x

Ishimaru T, Ida M, Hirose S, et al (2015) Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase. Rice 8:1–15. https://doi.org/10.1186/s12284-015-0057-2

Ishimaru T, Matsuda T, Ohsugi R, Yamagishi T (2003) Morphological development of rice caryopses located at the different positions in a panicle from early to middle stage of grain filling. Funct Plant Biol 30:1139–1149. https://doi.org/10.1071/FP03122

Ishimoto K, Sohonahra S, Kishi-Kaboshi M, et al (2019) Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice. Dev 146:. https://doi.org/10.1242/dev.176305

Ito M, Sentoku N, Nishimura A, et al (2002) Position dependent expression of gl2-type homeobox gene, roc1: Significance for protoderm differentiation and radial pattern formation in early rice embryogenesis. Plant J 29:497–507. https://doi.org/10.1046/j.1365-313x.2002.01234.x

Ito M, Sentoku N, Nishimura A, et al (2003) Roles of rice GL2-type homeobox genes in epidermis differentiation. Breed Sci 53:245–253. https://doi.org/10.1270/jsbbs.53.245

Ito Y, Kimura F, Hirakata K, et al (2011) Fatty acid elongase is required for shoot development in rice.Plant J 66:680–688. https://doi.org/10.1111/j.1365-313X.2011.04530.x

Javelle M, Vernoud V, Rogowsky PM, Ingram GC (2011) Epidermis: the formation and functions of a fundamental plant tissue. New Phytol 189:17–39. https://doi.org/10.1111/j.1469-8137.2010.03514.x

Jeon JS, Ryoo N, Hahn TR, et al (2010) Starch biosynthesis in cereal endosperm. Plant Physiol Biochem 48:383–392. https://doi.org/10.1016/j.plaphy.2010.03.006

Jin P, Guo T, Becraft PW (2000) The maize CR4 receptor-like kinase mediates a growth factor-like differentiation response. genesis 27:104–116. https://doi.org/10.1002/1526- 968X(200007)27:3<104::AID-GENE30>3.0.CO;2-I

Kessler S, Seiki S, Sinha N (2002) Xcl1 causes delayed oblique periclinal cell divisions in developing maize leaves, leading to cellular differentiation by lineage instead of position. Development 129:1859–1869

Kiesselbach T (2001) The structure and reproduction of corn. Biol Plant 44:238–238. https://doi.org/10.1023/a:1010248820060

Kouchi H, Hata S (1993) Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development. MGG Mol Gen Genet 238:106–119. https://doi.org/10.1007/BF00279537

Kurdyukov S, Faust A, Trenkamp S, et al (2006) Genetic and biochemical evidence for involvement of HOTHEAD in the biosynthesis of long-chain α-,ω-dicarboxylic fatty acids and formation of extracellular matrix. Planta 224:315–329. https://doi.org/10.1007/s00425-005-0215-7

Kuwano M, Masumura T, Yoshida KT (2011) A novel endosperm transfer cell-containing region-specific gene and its promoter in rice. Plant Mol Biol 76:47–56. https://doi.org/10.1007/s11103-011-9765-1

Larkin JC, Brown ML, Schiefelbein J (2003) How do cells know what they want to be when they grow up? Lessons from epidermal patterning in arabidopsis. Annu Rev Plant Biol 54:403–430. https://doi.org/10.1146/annurev.arplant.54.031902.134823

Lee SK, Hwang SK, Han M, et al (2007) Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.). Plant Mol Biol 65:531–546. https://doi.org/10.1007/s11103-007-9153-z

Leroux BM, Goodyke AJ, Schumacher KI, et al (2014) Maize early endosperm growth and development: Rom fertilization through cell type. Am J Bot 101:1259–1274. https://doi.org/10.3732/ajb.1400083

Lewis D, Bacic A, Chandler PM, Newbigin EJ (2009) Aberrant cell expansion in the elongation mutants of barley. Plant Cell Physiol 50:554–571. https://doi.org/10.1093/pcp/pcp015

Lid SE, Al RH, Krekling T, et al (2004) The maize disorganized aleurone layer 1 and 2 [dil1, dil2] mutants lack control of the mitotic division plane in the aleurone layer of developing endosperm. Planta 218:370–378. https://doi.org/10.1007/s00425-003-1116-2

Lid SE, Gruis D, Jung R, et al (2002) The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily. Proc Natl Acad Sci 99:5460–5465. https://doi.org/10.1073/pnas.042098799

Liu J, Wu X, Yao X, et al (2018) Mutations in the DNA demethylase OsROS1 result in a thickened aleurone and improved nutritional value in rice grains. Proc Natl Acad Sci U S A 115:11327– 11332. https://doi.org/10.1073/pnas.1806304115

Mi H, Ebert D, Muruganujan A, et al (2020) PANTHER version 16: a revised family classification, tree- based classification tool, enhancer regions and extensive. Nucleic Acids Res 1–10. https://doi.org/10.1093/nar/gkaa1106

Milligan AS, Lopato S, Kovalchuk N, Langridge P (2013) Functional Genomics of Seed Development in Cereals. In Gupta P and Varshney R (ed) Cereal Genomics II. Springer Netherlands, Dordrecht,pp215-245. https://doi.org/10.1007/978-94-007-6401-9

Miyoshi K, Kagaya Y, Ogawa Y, et al (2002) Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice. Plant Cell Physiol 43:307–313. https://doi.org/10.1093/pcp/pcf040

Morrison IN, Kuo J, O’Brien TP (1975) Histochemistry and fine structure of developing wheat aleurone cells. Planta 123:105–116. https://doi.org/10.1007/BF00383859

Nakagawa T, Kurose T, Hino T, et al (2007a) Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. J Biosci Bioeng 104:34–41. https://doi.org/10.1263/jbb.104.34

Nakagawa T, Suzuki T, Murata S, et al (2007b) Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci Biotechnol Biochem 71:2095–2100. https://doi.org/10.1271/bbb.70216

Nie DM, Ouyang YD, Wang X, et al (2013) Genome-wide analysis of endosperm-specific genes in rice.Gene 530:236–247. https://doi.org/10.1016/j.gene.2013.07.088

Nishimura A, Aichi I, Matsuoka M (2007) A protocol for Agrobacterium-mediated transformation in rice.

Nat Protoc 1:2796–2802. https://doi.org/10.1038/nprot.2006.469

Olsen OA (2001) Endosperm development: Cellularization and cell fate specification. Annu Rev Plant Biol 52:233–267. https://doi.org/10.1146/annurev.arplant.52.1.233

Olsen OA (2004) Nuclear endosperm development in cereals and Arabidopsis thaliana. Plant Cell 16:214–228. https://doi.org/10.1105/tpc.017111

Olsen OA (2020) The Modular Control of Cereal Endosperm Development. Trends Plant Sci 25:279–290. https://doi.org/10.1016/j.tplants.2019.12.003

Olsen OA, Brown RC, Lemmon BE (1995) Pattern and process of wall formation in developing endosperm. BioEssays 17:803–812. https://doi.org/10.1002/bies.950170910

Qing L, Aoyama T (2012) Pathways for epidermal cell differentiation via the homeobox gene GLABRA2: update on the roles of the classic egulator. J Integr Plant Biol 54:729–737. https://doi.org/10.1111/j.1744-7909.2012.01159.x

Qu J, Ma C, Feng J, et al (2016) Transcriptome dynamics during maize endosperm development. PLoS One 11:1–22. https://doi.org/10.1371/journal.pone.0163814

Royo J, Gómez E, Hueros G (2007) Transfer Cells. In: Olsen OA (ed) Endosperm. Springer Berlin Heidelberg, Berlin, Heidelberg, pp 73–89. http://doi.org/10.1007/7089_2007_110

Sato Y, Takehisa H, Kamatsuki K, et al (2013) RiceXPro Version 3.0: Expanding the informatics resource for rice transcriptome. Nucleic Acids Res 41:1206–1213. https://doi.org/10.1093/nar/gks1125

0Shen B, Li C, Min Z, et al (2003) sal1 determines the number of aleurone cell layers in maize endosperm and encodes a class E vacuolar sorting protein. Proc Natl Acad Sci U S A 100:6552–7. https://doi.org/10.1073/pnas.0732023100

Suzuki K, Miyake H, Taniguchi T, Maeda E (2000) Cellularization of the free nuclear endosperm in rice caryopsis revealed by light and electron microscopy. Plant Prod Sci 3:446–458. https://doi.org/10.1626/pps.3.446

Takada S, Takada N, Yoshida A (2013) ATML1 promotes epidermal cell differentiation in Arabidopsis shoots. Dev 140:1919–1923. https://doi.org/10.1242/dev.094417

Tanaka H, Watanabe M, Sasabe M, et al (2007) Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis. Development 134:1643–1652. https://doi.org/10.1242/dev.003533

Ueda M, Zhang Z, Laux T (2011) Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 Links zygote polarity to embryo development. Dev Cell 20:264–270. https://doi.org/10.1016/j.devcel.2011.01.009

Wisniewski JP, Rogowsky PM (2004) Vacuolar H+-translocating inorganic pyrophosphatase (Vpp1) marks partial aleurone cell fate in cereal endosperm development. Plant Mol Biol 56:325–337. https://doi.org/10.1007/s11103-004-3414-x

Wu H, Gontarek BC, Yi G, et al (2020) The thick aleurone1 gene encodes a NOT1 subunit of the CCR4- NOT complex and regulates cell patterning in endosperm. Plant Physiol 184:960–972. https://doi.org/10.1104/pp.20.00703

Wu X, Liu J, Li D, Liu CM (2016) Rice caryopsis development II: Dynamic changes in the endosperm. J Integr Plant Biol 58:786–798. https://doi.org/10.1111/jipb.12488

Xu JJ, Zhang XF, Xue HW (2016) Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor. J Exp Bot 67:6399–6411. https://doi.org/10.1093/jxb/erw409

Yephremov A, Wisman E, Huijser P, et al (1999) Characterization of the FIDDLEHEAD gene of Arabidopsis reveals a link between adhesion response and cell differentiation in the epidermis. Plant Cell 11:2187–2201. https://doi.org/10.1105/tpc.11.11.2187

Yi G, Lauter AM, Paul Scott M, Becraft PW (2011) The thick aleurone1 mutant defines a negative regulation of maize aleurone cell fate that functions downstream of defective kernel. Plant Physiol 156:1826–1836. https://doi.org/10.1104/pp.111.177725

Yi G, Neelakandan AK, Gontarek BC, et al (2015) The naked endosperm genes encode duplicate INDETERMINATE domain transcription factors required for maize endosperm cell patterning and differentiation. Plant Physiol 167:443–456. https://doi.org/10.1104/pp.114.251413

Zhan J, Thakare D, Ma C, et al (2015) RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation. Plant Cell 27:513–531. https://doi.org/10.1105/tpc.114.135657

参考文献をもっと見る

全国の大学の
卒論・修論・学位論文

一発検索!

この論文の関連論文を見る