Chapter 1
1. Renaud C, Xie H, Seo S, et al. Mortality rates of human metapneumovirus and respiratory syncytial virus lower respiratory tract infections in hematopoietic cell transplantation recipients. Biol Blood Marrow Transplant. Aug 2013;19(8):1220-6. doi:10.1016/j.bbmt.2013.05.005
2. Chemaly RF, Shah DP, Boeckh MJ. Management of respiratory viral infections in hematopoietic cell transplant recipients and patients with hematologic malignancies. Clin Infect Dis. Nov 15 2014;59 Suppl 5:S344-51. doi:10.1093/cid/ciu623
3. Lo MS, Lee GM, Gunawardane N, Burchett SK, Lachenauer CS, Lehmann LE. The impact of RSV, adenovirus, influenza, and parainfluenza infection in pediatric patients receiving stem cell transplant, solid organ transplant, or cancer chemotherapy. Pediatr Transplant. Mar 2013;17(2):133-43. doi:10.1111/petr.12022
4. Weigt SS, Gregson AL, Deng JC, Lynch JP, 3rd, Belperio JA. Respiratory viral infections in hematopoietic stem cell and solid organ transplant recipients. Semin Respir Crit Care Med. Aug 2011;32(4):471-93. doi:10.1055/s-0031-1283286
5. Renaud C, Campbell AP. Changing epidemiology of respiratory viral infections in hematopoietic cell transplant recipients and solid organ transplant recipients. Curr Opin Infect Dis. Aug 2011;24(4):333-43. doi:10.1097/QCO.0b013e3283480440
6. Cherry JD, Harrison GJ, Kaplan SL, Hotez PJ, Steinbach WJ. Feigin and Cherry's textbook of pediatric infectious diseases. Seventh edition. ed. Elsevier/Saunders; 2014:2 volumes.
7. Self WH, Williams DJ, Zhu Y, et al. Respiratory Viral Detection in Children and Adults: Comparing Asymptomatic Controls and Patients With Community-Acquired Pneumonia. J Infect Dis. Feb 15 2016;213(4):584-91. doi:10.1093/infdis/jiv323
8. Milano F, Campbell AP, Guthrie KA, et al. Human rhinovirus and coronavirus detection among allogeneic hematopoietic stem cell transplantation recipients. Blood. Mar 11 2010;115(10):2088-94. doi:10.1182/blood-2009-09-244152
9. Uhlenhaut C, Cohen JI, Pavletic S, et al. Use of a novel virus detection assay to identify coronavirus HKU1 in the lungs of a hematopoietic stem cell transplant recipient with fatal pneumonia. Transpl Infect Dis. Feb 2012;14(1):79-85. doi:10.1111/j.1399-3062.2011.00657.x
10. Folz RJ, Elkordy MA. Coronavirus pneumonia following autologous bone marrow transplantation for breast cancer. Chest. Mar 1999;115(3):901-5. doi:10.1378/chest.115.3.901
11. Pene F, Merlat A, Vabret A, et al. Coronavirus 229E-related pneumonia in immunocompromised patients. Clin Infect Dis. Oct 1 2003;37(7):929-32. doi:10.1086/377612
12. Oosterhof L, Christensen CB, Sengelov H. Fatal lower respiratory tract disease with human corona virus NL63 in an adult haematopoietic cell transplant recipient. Bone Marrow Transplant. Jun 2010;45(6):1115-6. doi:10.1038/bmt.2009.292
13. Hakki M, Rattray RM, Press RD. The clinical impact of coronavirus infection in patients with hematologic malignancies and hematopoietic stem cell transplant recipients. J Clin Virol. Jul 2015;68:1-5. doi:10.1016/j.jcv.2015.04.012
14. Garbino J, Crespo S, Aubert JD, et al. A prospective hospital-based study of the clinical impact of non-severe acute respiratory syndrome (Non-SARS)-related human coronavirus infection. Clin Infect Dis. Oct 15 2006;43(8):1009-15. doi:10.1086/507898
15. Englund JA, Boeckh M, Kuypers J, et al. Brief communication: fatal human metapneumovirus infection in stem-cell transplant recipients. Ann Intern Med. Mar 7 2006;144(5):344-9. doi:10.7326/0003- 4819-144-5-200603070-00010
16. Seo S, Xie H, Campbell AP, et al. Parainfluenza virus lower respiratory tract disease after hematopoietic cell transplant: viral detection in the lung predicts outcome. Clin Infect Dis. May 2014;58(10):1357-68. doi:10.1093/cid/ciu134
17. Waghmare A, Campbell AP, Xie H, et al. Respiratory syncytial virus lower respiratory disease in hematopoietic cell transplant recipients: viral RNA detection in blood, antiviral treatment, and clinical outcomes. Clin Infect Dis. Dec 2013;57(12):1731-41. doi:10.1093/cid/cit639
18. Choi SM, Boudreault AA, Xie H, Englund JA, Corey L, Boeckh M. Differences in clinical outcomes after 2009 influenza A/H1N1 and seasonal influenza among hematopoietic cell transplant recipients. Blood. May 12 2011;117(19):5050-6. doi:10.1182/blood-2010-11-319186
19. Kuypers J, Martin ET, Heugel J, Wright N, Morrow R, Englund JA. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics. Jan 2007;119(1):e70-6. doi:10.1542/peds.2006-1406
20. Arabi YM, Arifi AA, Balkhy HH, et al. Clinical course and outcomes of critically ill patients with Middle East respiratory syndrome coronavirus infection. Ann Intern Med. Mar 18 2014;160(6):389-97. doi:10.7326/M13-2486
21. Leung GM, Hedley AJ, Ho LM, et al. The epidemiology of severe acute respiratory syndrome in the 2003 Hong Kong epidemic: an analysis of all 1755 patients. Ann Intern Med. Nov 2 2004;141(9):662-73. doi:10.7326/0003-4819-141-9-200411020-00006
22. Chan JW, Ng CK, Chan YH, et al. Short term outcome and risk factors for adverse clinical outcomes in adults with severe acute respiratory syndrome (SARS). Thorax. Aug 2003;58(8):686-9. doi:10.1136/thorax.58.8.686
23. Hirsch HH, Martino R, Ward KN, Boeckh M, Einsele H, Ljungman P. Fourth European Conference on Infections in Leukaemia (ECIL-4): guidelines for diagnosis and treatment of human respiratory syncytial virus, parainfluenza virus, metapneumovirus, rhinovirus, and coronavirus. Clin Infect Dis. Jan 2013;56(2):258-66. doi:10.1093/cid/cis844
24. de Fontbrune FS, Robin M, Porcher R, et al. Palivizumab treatment of respiratory syncytial virus infection after allogeneic hematopoietic stem cell transplantation. Clin Infect Dis. Oct 15 2007;45(8):1019-24. doi:10.1086/521912
25. Lee J, Storch GA. Characterization of human coronavirus OC43 and human coronavirus NL63 infections among hospitalized children <5 years of age. Pediatr Infect Dis J. Aug 2014;33(8):814-20. doi:10.1097/INF.0000000000000292
26. Gerna G, Campanini G, Rovida F, et al. Genetic variability of human coronavirus OC43-, 229E-, and NL63-like strains and their association with lower respiratory tract infections of hospitalized infants and immunocompromised patients. J Med Virol. Jul 2006;78(7):938-49. doi:10.1002/jmv.20645
27. Gaunt ER, Hardie A, Claas EC, Simmonds P, Templeton KE. Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol. Aug 2010;48(8):2940-7. doi:10.1128/JCM.00636-10
28. Dominguez SR, Robinson CC, Holmes KV. Detection of four human coronaviruses in respiratory infections in children: a one-year study in Colorado. J Med Virol. Sep 2009;81(9):1597-604. doi:10.1002/jmv.21541
29. Kristoffersen AW, Nordbo SA, Rognlien AG, Christensen A, Dollner H. Coronavirus causes lower respiratory tract infections less frequently than RSV in hospitalized Norwegian children. Pediatr Infect Dis J. Apr 2011;30(4):279-83. doi:10.1097/INF.0b013e3181fcb159
30. Choi SM, Xie H, Campbell AP, et al. Influenza viral RNA detection in blood as a marker to predict disease severity in hematopoietic cell transplant recipients. J Infect Dis. Dec 15 2012;206(12):1872-7. doi:10.1093/infdis/jis610
Chapter 2
1. Arabi YM, Arifi AA, Balkhy HH, et al. Clinical course and outcomes of critically ill patients with Middle East respiratory syndrome coronavirus infection. Ann Intern Med. Mar 18 2014;160(6):389-97. doi:10.7326/M13-2486
2. Leung GM, Hedley AJ, Ho LM, et al. The epidemiology of severe acute respiratory syndrome in the 2003 Hong Kong epidemic: an analysis of all 1755 patients. Ann Intern Med. Nov 2 2004;141(9):662-73. doi:10.7326/0003-4819-141-9-200411020-00006
3. Chan JW, Ng CK, Chan YH, et al. Short term outcome and risk factors for adverse clinical outcomes in adults with severe acute respiratory syndrome (SARS). Thorax. Aug 2003;58(8):686-9. doi:10.1136/thorax.58.8.686
4. Cho SY, Kang JM, Ha YE, et al. MERS-CoV outbreak following a single patient exposure in an emergency room in South Korea: an epidemiological outbreak study. Lancet. Sep 3 2016;388(10048):994-1001. doi:10.1016/S0140-6736(16)30623-7
5. Cherry JD, Harrison GJ, Kaplan SL, Hotez PJ, Steinbach WJ. Feigin and Cherry's textbook of pediatric infectious diseases. Seventh edition. ed. Elsevier/Saunders; 2014:2 volumes.
6. Greenberg SB. Update on Human Rhinovirus and Coronavirus Infections. Semin Respir Crit Care Med. Aug 2016;37(4):555-71. doi:10.1055/s-0036-1584797
7. Arens MQ, Buller RS, Rankin A, et al. Comparison of the Eragen Multi-Code Respiratory Virus Panel with conventional viral testing and real-time multiplex PCR assays for detection of respiratory viruses. J Clin Microbiol. Jul 2010;48(7):2387-95. doi:10.1128/JCM.00220-10
8. Caliendo AM. Multiplex PCR and emerging technologies for the detection of respiratory pathogens. Clin Infect Dis. May 2011;52 Suppl 4:S326-30. doi:10.1093/cid/cir047
9. Lee J, Storch GA. Characterization of human coronavirus OC43 and human coronavirus NL63 infections among hospitalized children <5 years of age. Pediatr Infect Dis J. Aug 2014;33(8):814-20. doi:10.1097/INF.0000000000000292
10. Dominguez SR, Robinson CC, Holmes KV. Detection of four human coronaviruses in respiratory infections in children: a one-year study in Colorado. J Med Virol. Sep 2009;81(9):1597-604. doi:10.1002/jmv.21541
11. Self WH, Williams DJ, Zhu Y, et al. Respiratory Viral Detection in Children and Adults: Comparing Asymptomatic Controls and Patients With Community-Acquired Pneumonia. J Infect Dis. Feb 15 2016;213(4):584-91. doi:10.1093/infdis/jiv323
12. Ogimi C, Waghmare AA, Kuypers JM, et al. Clinical Significance of Human Coronavirus in Bronchoalveolar Lavage Samples from Hematopoietic Cell Transplantation Recipients and Patients with Hematologic Malignancies. Clin Infect Dis. Feb 17 2017;doi:10.1093/cid/cix160
13. Chu HY, Renaud C, Ficken E, Thomson B, Kuypers J, Englund JA. Respiratory Tract Infections Due to Human Metapneumovirus in Immunocompromised Children. J Pediatric Infect Dis Soc. Dec 2014;3(4):286-93. doi:10.1093/jpids/piu100
14. Chu HY, Chin J, Pollard J, Zerr DM, Englund JA. Clinical outcomes in outpatient respiratory syncytial virus infection in immunocompromised children. Influenza Other Respir Viruses. May 2016;10(3):205-10. doi:10.1111/irv.12375
15. Xu M, Qin X, Astion ML, et al. Implementation of filmarray respiratory viral panel in a core laboratory improves testing turnaround time and patient care. Am J Clin Pathol. Jan 2013;139(1):118-23. doi:10.1309/AJCPH7X3NLYZPHBW
16. Chu HY, Englund JA, Strelitz B, et al. Rhinovirus Disease in Children Seeking Care in a Tertiary Pediatric Emergency Department. Journal of the Pediatric Infectious Diseases Society. 2014:1-10. doi:10.1093/jpids/piu099
17. Arden KE, Nissen MD, Sloots TP, Mackay IM. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J Med Virol. Mar 2005;75(3):455-62. doi:10.1002/jmv.20288
18. Dijkman R, Jebbink MF, Gaunt E, et al. The dominance of human coronavirus OC43 and NL63 infections in infants. J Clin Virol. Feb 2012;53(2):135-9. doi:10.1016/j.jcv.2011.11.011
19. Gerna G, Campanini G, Rovida F, et al. Genetic variability of human coronavirus OC43-, 229E-, and NL63-like strains and their association with lower respiratory tract infections of hospitalized infants and immunocompromised patients. J Med Virol. Jul 2006;78(7):938-49. doi:10.1002/jmv.20645
20. Lau SK, Woo PC, Yip CC, et al. Coronavirus HKU1 and other coronavirus infections in Hong Kong. J Clin Microbiol. Jun 2006;44(6):2063-71. doi:10.1128/JCM.02614-05
21. Talbot HK, Crowe JE, Jr., Edwards KM, et al. Coronavirus infection and hospitalizations for acute respiratory illness in young children. J Med Virol. May 2009;81(5):853-6. doi:10.1002/jmv.21443
22. Renaud C, Campbell AP. Changing epidemiology of respiratory viral infections in hematopoietic cell transplant recipients and solid organ transplant recipients. Curr Opin Infect Dis. Aug 2011;24(4):333-43. doi:10.1097/QCO.0b013e3283480440
23. Weigt SS, Gregson AL, Deng JC, Lynch JP, 3rd, Belperio JA. Respiratory viral infections in hematopoietic stem cell and solid organ transplant recipients. Semin Respir Crit Care Med. Aug 2011;32(4):471-93. doi:10.1055/s-0031-1283286
24. Srinivasan A, Gu Z, Smith T, et al. Prospective detection of respiratory pathogens in symptomatic children with cancer. Pediatr Infect Dis J. Mar 2013;32(3):e99-e104. doi:10.1097/INF.0b013e31827bd619
25. Trombetta H, Faggion HZ, Leotte J, Nogueira MB, Vidal LR, Raboni SM. Human coronavirus and severe acute respiratory infection in Southern Brazil. Pathog Glob Health. May 2016;110(3):113-8. doi:10.1080/20477724.2016.1181294
26. Milano F, Campbell AP, Guthrie KA, et al. Human rhinovirus and coronavirus detection among allogeneic hematopoietic stem cell transplantation recipients. Blood. Mar 11 2010;115(10):2088-94. doi:10.1182/blood-2009-09-244152
27. Talbot HK, Shepherd BE, Crowe JE, Jr., et al. The pediatric burden of human coronaviruses evaluated for twenty years. Pediatr Infect Dis J. Aug 2009;28(8):682-7. doi:10.1097/INF.0b013e31819d0d27
28. Kristoffersen AW, Nordbo SA, Rognlien AG, Christensen A, Dollner H. Coronavirus causes lower respiratory tract infections less frequently than RSV in hospitalized Norwegian children. Pediatr Infect Dis J. Apr 2011;30(4):279-83. doi:10.1097/INF.0b013e3181fcb159
29. Kuypers J, Martin ET, Heugel J, Wright N, Morrow R, Englund JA. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics. Jan 2007;119(1):e70-6. doi:10.1542/peds.2006-1406
30. Nunes MC, Kuschner Z, Rabede Z, et al. Clinical epidemiology of bocavirus, rhinovirus, two polyomaviruses and four coronaviruses in HIV-infected and HIV-uninfected South African children. PLoS One. 2014;9(2):e86448. doi:10.1371/journal.pone.0086448
31. Martin ET, Kuypers J, Wald A, Englund JA. Multiple versus single virus respiratory infections: viral load and clinical disease severity in hospitalized children. Influenza Other Respir Viruses. Jan 2012;6(1):71-7. doi:10.1111/j.1750-2659.2011.00265.x
32. Crotty MP, Meyers S, Hampton N, et al. Epidemiology, Co-Infections, and Outcomes of Viral Pneumonia in Adults: An Observational Cohort Study. Medicine (Baltimore). Dec 2015;94(50):e2332. doi:10.1097/MD.0000000000002332
33. Gaunt ER, Hardie A, Claas EC, Simmonds P, Templeton KE. Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol. Aug 2010;48(8):2940-7. doi:10.1128/JCM.00636-10
34. Soderman M, Rhedin S, Tolfvenstam T, et al. Frequent Respiratory Viral Infections in Children with Febrile Neutropenia - A Prospective Follow-Up Study. PLoS One. 2016;11(6):e0157398. doi:10.1371/journal.pone.0157398
35. Suryadevara M, Tabarani CM, Bartholoma N, Rosenberg HF, Domachowske JB. Nasopharyngeal detection of respiratory viruses in febrile neutropenic children. Clin Pediatr (Phila). Dec 2012;51(12):1164-7. doi:10.1177/0009922812456736
36. Prill MM, Iwane MK, Edwards KM, et al. Human coronavirus in young children hospitalized for acute respiratory illness and asymptomatic controls. Pediatr Infect Dis J. Mar 2012;31(3):235-40. doi:10.1097/INF.0b013e31823e07fe
37. Singleton RJ, Bulkow LR, Miernyk K, et al. Viral respiratory infections in hospitalized and community control children in Alaska. J Med Virol. Jul 2010;82(7):1282-90. doi:10.1002/jmv.21790
38. Srinivasan A, Flynn P, Gu Z, et al. Detection of respiratory viruses in asymptomatic children undergoing allogeneic hematopoietic cell transplantation. Pediatr Blood Cancer. Jan 2013;60(1):149-51. doi:10.1002/pbc.24314
39. Byington CL, Ampofo K, Stockmann C, et al. Community Surveillance of Respiratory Viruses Among Families in the Utah Better Identification of Germs-Longitudinal Viral Epidemiology (BIG-LoVE) Study. Clin Infect Dis. Oct 15 2015;61(8):1217-24. doi:10.1093/cid/civ486