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Self-assembly of CIP4 drives actin-mediated asymmetric pit-closing in clathrin-mediated endocytosis

Yu, Yiming Yoshimura, Shige H. 京都大学 DOI:10.1038/s41467-023-40390-y

2023.08.01

概要

Clathrin-mediated endocytosis is pivotal to signal transduction pathways between the extracellular environment and the intracellular space. Evidence from live-cell imaging and super-resolution microscopy of mammalian cells suggests an asymmetric distribution of actin fibres near the clathrin-coated pit, which induces asymmetric pit-closing rather than radial constriction. However, detailed molecular mechanisms of this ‘asymmetricity’ remain elusive. Herein, we used high-speed atomic force microscopy to demonstrate that CIP4, a multi-domain protein with a classic F-BAR domain and intrinsically disordered regions, is necessary for asymmetric pit-closing. Strong self-assembly of CIP4 via intrinsically disordered regions, together with stereospecific interactions with the curved membrane and actin-regulating proteins, generates a small actin-rich environment near the pit, which deforms the membrane and closes the pit. Our results provide mechanistic insights into how disordered and structured domain collaboration promotes spatio-temporal actin polymerisation near the plasma membrane.

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Acknowledgements

We thank T. Ozaki, K. Deguchi, S. Dodo, and B. Yi at Kyoto University,

Graduate School of Biostudies for their technical assistance. We are

especially thankful to Dr. F. Ishidate at the iCeMS Analysis Centre,

Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University Institute for Advanced Study (KUIAS), for his technical assistance

in super-resolution structural illumination microscopy (Elyra 7). We also

thank Mr. Sakai, Mr. Uekusa, Mr. Yagi, and Mr. Ito for their assistance in

constructing and maintaining the HS-AFM system, and Dr. Y. Sasaki at

Kyoto University for their useful discussion on protein multimerisation.

This work was supported by JSPS KAKENHI Grant Numbers JP18H02436,

JP18KK0196, JP19K22422, 19H04830, JP22H05171, and JP23H00369 to

S.H.Y. and AMED (Japan Agency for Medical Research and Development) under Grant Number JP18gm5810018 and JP20wm0325009

to S.H.Y.

Author contributions

Experiments were designed by Y.Y. and S.H.Y. Plasmids construction,

recombinant protein purification, pull-down assay, cell culture and

transfection, live-cell HS-AFM imaging and correlative imaging, live-cell

confocal fluorescence microscopy, super-resolution SIM live-cell imaging, and gel-filtration chromatography were performed by Y.Y. Phase

separation assay and CD spectroscopy were performed by Y.Y. and

S.H.Y. Data analysis was completed by Y.Y. and S.H.Y. Manuscript writing, figure design, and editing was done by Y.Y. and S.H.Y. S.H.Y

supervised and funded the project.

Competing interests

The authors declare no competing interests.

Additional information

Supplementary information The online version contains

supplementary material available at

https://doi.org/10.1038/s41467-023-40390-y.

Correspondence and requests for materials should be addressed to

Shige H. Yoshimura.

Peer review information Nature Communications thanks Grigory

Tagiltsev, Wade Zeno and the other, anonymous, reviewer(s) for their

contribution to the peer review of this work. A peer review file is available.

Reprints and permissions information is available at

http://www.nature.com/reprints

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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