Al-Zaeed, N., Budai, Z., Szondy, Z., and Sarang, Z. (2021). TAM kinase signaling is
indispensable for proper skeletal muscle regeneration in mice. Cell. Death Dis. 12, 611.
doi:10.1038/s41419-021-03892-5
Juhas, M., Engelmayr, G. C., Fontanella, A. N., Palmer, G. M., and Bursac, N. (2014).
Biomimetic engineered muscle with capacity for vascular integration and functional
maturation in vivo. Proc. Natl. Acad. Sci. 111, 5508–5513. doi:10.1073/pnas.1402723111
Almada, A. E., and Wagers, A. J. (2016). Molecular circuitry of stem cell fate in skeletal muscle
regeneration, ageing and disease. Nat. Rev. Mol. Cell. Biol. 17, 267–279. doi:10.1038/nrm.2016.7
Liao, Y., Smyth, G. K., and Shi, W. (2014). FeatureCounts: An efficient general
purpose Program for assigning sequence reads to genomic features. Bioinformatics 30,
923–930. doi:10.1093/bioinformatics/btt656
Baht, G. S., Bareja, A., Lee, D. E., Rao, R. R., Huang, R., Huebner, J. L., et al. (2020).
Meteorin-like facilitates skeletal muscle repair through a stat3/IGF-1 mechanism. Nat.
Metab. 2, 278–289. doi:10.1038/s42255-020-0184-y
Lu, H., Huang, D., Saederup, N., Charo, I. F., Ransohoff, R. M., and Zhou, L. (2011).
Macrophages recruited via CCR2 produce insulin-like growth factor-1 to repair acute
skeletal muscle injury. FASEB J. 25, 358–369. doi:10.1096/fj.10-171579
Bhattarai, S., Li, Q., Ding, J., Liang, F., Gusev, E., Lapohos, O., et al. (2022). TLR4 is a
regulator of trained immunity in a murine model of Duchenne muscular dystrophy.
Nat. Commun. 13, 879. doi:10.1038/s41467-022-28531-1
Mauro, A. (1961). Satellite cell of skeletal muscle fibers. J. Biophysical Biochem. Cytol.
9, 493–495. doi:10.1083/jcb.9.2.493
Burzyn, D., Kuswanto, W., Kolodin, D., Shadrach, J. L., Cerletti, M., Jang, Y., et al.
(2013). A special population of regulatory T cells potentiates muscle repair. Cell. 155,
1282–1295. doi:10.1016/j.cell.2013.10.054
McLennan, I. S. (1996). Degenerating and regenerating skeletal muscles contain
several subpopulations of macrophages with distinct spatial and temporal distributions.
J. Anat. 188, 17–28.
Cantini, M., Massimino, M. L., Rapizzi, E., Rossini, K., Catani, C., Dallalibera, L., et al.
(1995). Human satellite cell-proliferation in vitro is regulated by autocrine secretion of
IL-6 stimulated by a soluble factor(s) released by activated monocytes. Biochem.
Biophysical Res. Commun. 216, 49–53. doi:10.1006/bbrc.1995.2590
O’Carroll, C., Fagan, A., Shanahan, F., and Carmody, R. J. (2014). Identification of a unique
hybrid macrophage-polarization state following recovery from lipopolysaccharide tolerance.
J. Immunol. 192, 427–436. doi:10.4049/jimmunol.1301722
Paliwal, P., Pishesha, N., Wijaya, D., and Conboy, I. M. (2012). Age dependent
increase in the levels of osteopontin inhibits skeletal muscle regeneration. Aging 4,
553–566. doi:10.18632/aging.100477
Castiglioni, A., Corna, G., Rigamonti, E., Basso, V., Vezzoli, M., Monno, A., et al.
(2015). FOXP3+ T cells recruited to sites of sterile skeletal muscle injury regulate the fate
of satellite cells and guide effective tissue regeneration. PloS One 10, e0128094. doi:10.
1371/journal.pone.0128094
Chazaud, B. (2020). A macrophage-derived adipokine supports skeletal muscle
regeneration. Nat. Metab. 2, 213–214. doi:10.1038/s42255-020-0186-9
Quintin, J., Saeed, S., Martens, J. H. A., Giamarellos-Bourboulis, E. J., Ifrim, D. C.,
Logie, C., et al. (2012). Candida albicans infection affords protection against reinfection
via functional reprogramming of monocytes. Cell. Host Microbe 12, 223–232. doi:10.
1016/j.chom.2012.06.006
Davoudi, S., Xu, B., Jacques, E., Cadavid, J. L., McFee, M., Chin, C., et al. (2022).
MEndR: An in vitro functional assay to predict in vivo muscle stem cell-mediated repair.
Adv. Funct. Mater. 32, 2106548. doi:10.1002/adfm.202106548
Saclier, M., Cuvellier, S., Magnan, M., Mounier, R., and Chazaud, B. (2013).
Monocyte/macrophage interactions with myogenic precursor cells during skeletal
muscle regeneration. FEBS J. 280, 4118–4130. doi:10.1111/febs.12166
Dekkers, K. F., Neele, A. E., Jukema, J. W., Heijmans, B. T., and de Winther, M. P. J.
(2019). Human monocyte-to-macrophage differentiation involves highly localized gain
and loss of DNA methylation at transcription factor binding sites. Epigenetics chromatin
12, 34. doi:10.1186/s13072-019-0279-4
Saeed, S., Quintin, J., Kerstens, H. H. D., Rao, N. A., Aghajanirefah, A., Matarese, F.,
et al. (2014). Epigenetic programming of monocyte-to-macrophage differentiation and
trained innate immunity. Science 345, 1251086. doi:10.1126/science.1251086
Sass, F. A., Fuchs, M., Pumberger, M., Geissler, S., Duda, G. N., Perka, C., et al. (2018).
Immunology guides skeletal muscle regeneration. Int. J. Mol. Sci. 19, 835. doi:10.3390/
ijms19030835
Domínguez-Andrés, J., and Netea, M. G. (2020). The specifics of innate immune
memory. Science 368, 1052–1053. doi:10.1126/science.abc2660
Ferrara, P. J., Yee, E. M., Petrocelli, J. J., Fix, D. K., Hauser, C. T., de Hart, N. M. M. P.,
et al. (2022). Macrophage immunomodulation accelerates skeletal muscle functional
recovery in aged mice following disuse atrophy. J. Appl. physiology 133, 919–931. doi:10.
1152/japplphysiol.00374.2022
Seale, P., Sabourin, L. A., Girgis-Gabardo, A., Mansouri, A., Gruss, P., and Rudnicki,
M. A. (2000). Pax7 is required for the specification of myogenic satellite cells. Cell. 102,
777–786. doi:10.1016/S0092-8674(00)00066-0
Seeley, J. J., and Ghosh, S. (2017). Molecular mechanisms of innate memory and
tolerance to LPS. J. Leukoc. Biol. 101, 107–119. doi:10.1189/jlb.3MR0316-118RR
Fleming, J. W., Capel, A. J., Rimington, R. P., Wheeler, P., Leonard, A. N., Bishop, N.
C., et al. (2020). Bioengineered human skeletal muscle capable of functional
regeneration. BMC Biol. 18, 145. doi:10.1186/s12915-020-00884-3
Segawa, M., Fukada, S., Yamamoto, Y., Yahagi, H., Kanematsu, M., Sato, M., et al.
(2008). Suppression of macrophage functions impairs skeletal muscle regeneration with
severe fibrosis. Exp. Cell. Res. 314, 3232–3244. doi:10.1016/j.yexcr.2008.08.008
Fleming, J. W., Capel, A. J., Rimington, R. P., Player, D. J., Stolzing, A., and Lewis, M.
(2019). Functional regeneration of tissue engineered skeletal muscle in vitro is
dependent on the inclusion of basement membrane proteins. Cytoskeleton 76,
371–382. doi:10.1002/cm.21553
Shen, W., Li, Y., Zhu, J., Schwendener, R., and Huard, J. (2008). Interaction between
macrophages, TGF-beta1, and the COX-2 pathway during the inflammatory phase of skeletal
muscle healing after injury. J. Cell. Physiology 214, 405–412. doi:10.1002/jcp.21212
Foster, S. L., Hargreaves, D. C., and Medzhitov, R. (2007). Gene-specific control of
inflammation by TLR-induced chromatin modifications. Nature 447, 972–978. doi:10.
1038/nature05836
Sica, A., and Mantovani, A. (2012). Macrophage plasticity and polarization: In vivo
veritas. J. Clin. Investigation 122, 787–795. doi:10.1172/JCI59643
Simões, F. C., Cahill, T. J., Kenyon, A., Gavriouchkina, D., Vieira, J. M., Sun, X., et al. (2020).
Macrophages directly contribute collagen to scar formation during zebrafish heart regeneration
and mouse heart repair. Nat. Commun. 11, 600. doi:10.1038/s41467-019-14263-2
Gao, W. J., Liu, J. X., Liu, M. N., Yao, Y. D., Liu, Z. Q., Liu, L., et al. (2021). Macrophage 3D
migration: A potential therapeutic target for inflammation and deleterious progression in
diseases. Pharmacol. Res. 167, 105563. doi:10.1016/j.phrs.2021.105563
Subramanian, A., Kuehn, H., Gould, J., Tamayo, P., and Mesirov, J. P. (2007). GSEAP: A desktop application for gene set enrichment analysis. Bioinformatics 23,
3251–3253. doi:10.1093/bioinformatics/btm369
Ge, S. X., Jung, D., and Yao, R. (2020). ShinyGO: A graphical gene-set enrichment tool for
animals and plants. Bioinformatics 36, 2628–2629. doi:10.1093/bioinformatics/btz931
Ge, S. X., Son, E. W., and Yao, R. (2018). Idep: An integrated web application for
differential expression and pathway analysis of RNA-seq data. BMC Bioinforma. 19,
534. doi:10.1186/s12859-018-2486-6
Tedesco, F. S., Dellavalle, A., Diaz-Manera, J., Messina, G., and Cossu, G. (2010).
Repairing skeletal muscle: Regenerative potential of skeletal muscle stem cells. J. Clin.
Investigation 120, 11–19. doi:10.1172/JCI40373
Gong, T., Liu, L., Jiang, W., and Zhou, R. (2020). DAMP-sensing receptors in sterile
inflammation and inflammatory diseases. Nat. Rev. Immunol. 20, 95–112. doi:10.1038/
s41577-019-0215-7
Tiburcy, M., Markov, A., Kraemer, L. K., Christalla, P., Rave-Fraenk, M., Fischer, H. J.,
et al. (2019). Regeneration competent satellite cell niches in rat engineered skeletal
muscle. FASEB BioAdvances 1, 731–746. doi:10.1096/fba.2019-00013
Hardy, D., Besnard, A., Latil, M., Jouvion, G., Briand, D., Thépenier, C., et al. (2016).
Comparative study of injury models for studying muscle regeneration in mice. PLOS
ONE 11, e0147198. doi:10.1371/journal.pone.0147198
Uezumi, A., Fukada, S., Yamamoto, N., Takeda, S., and Tsuchida, K. (2010).
Mesenchymal progenitors distinct from satellite cells contribute to ectopic fat cell
formation in skeletal muscle. Nat. Cell. Biol. 12, 143–152. doi:10.1038/ncb2014
Hoene, M., Runge, H., Häring, H. U., Schleicher, E. D., and Weigert, C. (2013). Interleukin-6
promotes myogenic differentiation of mouse skeletal muscle cells: Role of the STAT3 pathway.
Am. J. Physiology-Cell Physiology 304, 128–136. doi:10.1152/ajpcell.00025.2012
Wynn, T. A., and Vannella, K. M. (2016). Macrophages in tissue repair, regeneration,
and fibrosis. Immunity 44, 450–462. doi:10.1016/j.immuni.2016.02.015
Jentho, E., and Weis, S. (2021). DAMPs and innate immune training. Front. Immunol.
12, 699563. doi:10.3389/fimmu.2021.699563
Yahiaoui, L., Gvozdic, D., Danialou, G., Mack, M., and Petrof, B. J. (2008). CC family
chemokines directly regulate myoblast responses to skeletal muscle injury. J. Physiology
586, 3991–4004. doi:10.1113/jphysiol.2008.152090
Joe, A. W. B., Yi, L., Natarajan, A., Grand, F. L., So, L., Wang, J., et al. (2010). Muscle
injury activates resident fibro/adipogenic progenitors that facilitate myogenesis. Nat.
Cell. Biol. 12, 153–163. doi:10.1038/ncb2015
Zhang, J., Qu, C., Li, T., Cui, W., Wang, X., and Du, J. (2019). Phagocytosis mediated
by scavenger receptor class BI promotes macrophage transition during skeletal muscle
regeneration. J. Biol. Chem. 294, 15672–15685. doi:10.1074/jbc.RA119.008795
Juhas, M., Abutaleb, N., Wang, J. T., Ye, J., Shaikh, Z., Sriworarat, C., et al. (2018).
Incorporation of macrophages into engineered skeletal muscle enables enhanced muscle
regeneration. Nat. Biomed. Eng. 2, 942–954. doi:10.1038/s41551-018-0290-2
Frontiers in Cell and Developmental Biology
Zubair, K., You, C., Kwon, G., and Kang, K. (2021). Two faces of macrophages:
Training and tolerance. Biomedicines 9, 1596. doi:10.3390/biomedicines9111596
11
frontiersin.org
...