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Elucidation of the mechanism of subunit exchange in αB crystallin oligomers

Inoue, Rintaro Sakamaki, Yusuke Takata, Takumi Wood, Kathleen Morishima, Ken Sato, Nobuhiro Okuda, Aya Shimizu, Masahiro Urade, Reiko Fujii, Noriko Sugiyama, Masaaki 京都大学 DOI:10.1038/s41598-021-82250-z

2021.01.28

概要

AlphaB crystallin (αB-crystallin) is a key protein for maintaining the long-term transparency of the eye lens. In the eye lens, αB-crystallin is a “dynamical” oligomer regulated by subunit exchange between the oligomers. To elucidate the unsettled mechanism of subunit exchange in αB-crystallin oligomers, the study was carried out at two different protein concentrations, 28.5 mg/mL (dense sample) and 0.45 mg/mL (dilute sample), through inverse contrast matching small-angle neutron scattering. Interestingly, the exchange rate of the dense sample was the same as that of the dilute sample. From analytical ultracentrifuge measurements, the coexistence of small molecular weight components and oligomers was detected, regardless of the protein concentration. The model proposed that subunit exchange could proceed through the assistance of monomers and other small oligomers; the key mechanism is attaching/detaching monomers and other small oligomers to/from oligomers. Moreover, this model successfully reproduced the experimental results for both dense and dilute solutions. It is concluded that the monomer and other small oligomers attaching/detaching mainly regulates the subunit exchange in αB-crystallin oligomer.

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参考文献

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Acknowledgements

The SANS experiments using Quokka at ANSTO were performed under Proposal No. 5744, 6161, and 7005,

respectively. This work was supported by MEXT/JSPS KAKENHI Grant Numbers JP17K07361, JP19KK0071,

JP20K06579 to R. I., JP19K16088 to K. M., JP17K07816 to N. S., JP20K22629 to M. Shimizu, JP18H05229,

JP18H05534, and JP18H03681 to M. Sugiyama). This was also partially supported by the Sasakawa Scientific

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Research Grant from The Japan Science Society to A. O. Travel expenses for the SANS experiment with Quokka

at ANSTO, Australia, were supported by the General User Program for Neutron Scattering Experiments, Institute

for Solid State Physics, The University of Tokyo (Proposal No. 17537), at JRR-3, Japan Atomic Energy Agency,

Tokai, Japan. This study was partially supported by the Radiation Application Development Association (RADA)

under the MEXT Support Program for Overseas Facility Users. This work was also partially supported by the

KumatorI Deuteration Station Project (KIDS Project) and project for Construction of the basis for advanced

materials science and analytical study by the innovative use of quantum beams and nuclear sciences at the

Institute for Integrated Radiation and Nuclear Science, Kyoto University. This work is partly supported by the

deuteration laboratory at the Materials and Life Science Experimental Facility at J-PARC.

Author contributions

R.I., Y.S., T.T., and N.F. prepared the hydrogenated and partially deuterated αB-crystallin. R.I., Y.S., K.M., K.W.,

N.S., A.O., M.S., R.U., and M.S. performed SANS experiments, and R.I., Y.S. and M.S. analyzed the SANS data.

K.M. performed FT-IR measurements on buffer and determined the ­D2O ratio of buffer. A.O. performed MALDITOF MS measurements and determined the degree of deuteration of partially deuterated αB-crystallin. Y.S. and

K.M. performed the AUC measurements and analyzed the AUC data. R.I. and Y.S. performed DLS measurements

and analyzed the DLS data. R.I., Y.S., and M.S. performed calculations for the modeling of subunit exchange.

R.I. and M.S. designed the research, and all authors wrote the paper.

Competing interests The authors declare no competing interests.

Additional information

Supplementary Information The online version contains supplementary material available at https​://doi.

org/10.1038/s4159​8-021-82250​-z.

Correspondence and requests for materials should be addressed to R.I. or M.S.

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