Abdullah, M. F., Hoffmann, E. R., Cotton, V. E., & Borts, R. H. (2004). A role for the MutL homologue MLH2 in controlling heteroduplex formation and in regulating between two different crossover pathways in budding yeast. Cytogenet Genome Res, 107(3-4), 180-190.https://doi.org/10.1159/000080596
Agarwal, S., & Roeder, G. S. (2000). Zip3 provides a link between recombination enzymes and synaptonemal complex proteins. Cell, 102(2), 245-255. https://doi.org/10.1016/s0092-8674(00)00029-5
Aravind, L., & Koonin, E. V. (1998). The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair. Trends Biochem Sci, 23(8), 284-286. https://doi.org/10.1016/s0968-0004(98)01257-2
Bergerat, A., de Massy, B., Gadelle, D., Varoutas, P. C., Nicolas, A., & Forterre,P. (1997). An atypical topoisomerase II from Archaea with implications for meiotic recombination. Nature, 386(6623), 414-417.https://doi.org/10.1038/386414a0
Blat, Y., Protacio, R. U., Hunter, N., & Kleckner, N. (2002). Physical and functional interactions among basic chromosome organizational features govern early steps of meiotic chiasma formation. Cell, 111(6), 791-802. https://doi.org/10.1016/s0092-8674(02)01167-4
Bonetti, D., Clerici, M., Manfrini, N., Lucchini, G., & Longhese, M. P. (2010). The MRX complex plays multiple functions in resection of Yku- and Rif2- protected DNA ends. PLoS One, 5(11), e14142. https://doi.org/10.1371/journal.pone.0014142
Borde, V., Robine, N., Lin, W., Bonfils, S., Géli, V., & Nicolas, A. (2009). Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J, 28(2), 99-111. https://doi.org/10.1038/emboj.2008.257
Borner, G. V., Barot, A., & Kleckner, N. (2008). Yeast Pch2 promotes domainal axis organization, timely recombination progression, and arrest of defective recombinosomes during meiosis. Proc Natl Acad Sci U S A, 105(9), 3327-3332. https://doi.org/10.1073/pnas.0711864105
Branzei, D., & Foiani, M. (2006). The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation. Exp Cell Res, 312(14), 2654-2659. https://doi.org/10.1016/j.yexcr.2006.06.012
Busygina, V., Sehorn, M. G., Shi, I. Y., Tsubouchi, H., Roeder, G. S., & Sung, P. (2008). Hed1 regulates Rad51-mediated recombination via a novel mechanism. Genes Dev, 22(6), 786-795.https://doi.org/10.1101/gad.1638708
Bähler, J., Wu, J. Q., Longtine, M. S., Shah, N. G., McKenzie, A., Steever, A. B., . . . Pringle, J. R. (1998). Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast, 14(10), 943-951. https://doi.org/10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y
Börner, G. V., Barot, A., & Kleckner, N. (2008). Yeast Pch2 promotes domainal axis organization, timely recombination progression, and arrest of defective recombinosomes during meiosis. Proc Natl Acad Sci U S A, 105(9), 3327-3332. https://doi.org/10.1073/pnas.0711864105
Callender, T. L., Laureau, R., Wan, L., Chen, X., Sandhu, R., Laljee, S., . . . Hollingsworth, N. M. (2016). Mek1 Down Regulates Rad51 Activity during Yeast Meiosis by Phosphorylation of Hed1. PLoS Genet, 12(8), e1006226.https://doi.org/10.1371/journal.pgen.1006226
Carballo, J. A., Johnson, A. L., Sedgwick, S. G., & Cha, R. S. (2008). Phosphorylation of the axial element protein Hop1 by Mec1/Tel1 ensures meiotic interhomolog recombination. Cell, 132(5), 758-770. https://doi.org/10.1016/j.cell.2008.01.035
Challa, K., Fajish V, G., Shinohara, M., Klein, F., Gasser, S. M., & Shinohara, A. (2019). Meiosis-specific prophase-like pathway controls cleavage- independent release of cohesin by Wapl phosphorylation. PLoS Genet, 15(1), e1007851. https://doi.org/10.1371/journal.pgen.1007851
Chen, C., Jomaa, A., Ortega, J., & Alani, E. E. (2014). Pch2 is a hexameric ring ATPase that remodels the chromosome axis protein Hop1. Proc Natl Acad Sci U S A, 111(1), E44-53. https://doi.org/10.1073/pnas.1310755111
Cheng, Y. H., Chuang, C. N., Shen, H. J., Lin, F. M., & Wang, T. F. (2013). Three distinct modes of Mec1/ATR and Tel1/ATM activation illustrate differential checkpoint targeting during budding yeast early meiosis. Mol Cell Biol, 33(16), 3365-3376. https://doi.org/10.1128/MCB.00438-13
Chowdhury, D., Xu, X., Zhong, X., Ahmed, F., Zhong, J., Liao, J., . . . Lieberman,J. (2008). A PP4-phosphatase complex dephosphorylates gamma-H2AX generated during DNA replication. Mol Cell, 31(1), 33-46. https://doi.org/10.1016/j.molcel.2008.05.016
Chua, P. R., & Roeder, G. S. (1998). Zip2, a meiosis-specific protein required for the initiation of chromosome synapsis. Cell, 93(3), 349-359. https://doi.org/10.1016/s0092-8674(00)81164-2
Chuang, C. N., Cheng, Y. H., & Wang, T. F. (2012). Mek1 stabilizes Hop1-Thr318 phosphorylation to promote interhomolog recombination and checkpoint responses during yeast meiosis. Nucleic Acids Res, 40(22), 11416-11427.https://doi.org/10.1093/nar/gks920
Downs, J. A., Lowndes, N. F., & Jackson, S. P. (2000). A role for Saccharomyces cerevisiae histone H2A in DNA repair. Nature, 408(6815), 1001-1004. https://doi.org/10.1038/35050000
Durocher, D., & Jackson, S. P. (2001). DNA-PK, ATM and ATR as sensors of DNA damage: variations on a theme? Curr Opin Cell Biol, 13(2), 225-231. https://doi.org/10.1016/s0955-0674(00)00201-5
Eichinger, C. S., & Jentsch, S. (2010). Synaptonemal complex formation and meiotic checkpoint signaling are linked to the lateral element protein Red1. Proc Natl Acad Sci U S A, 107(25), 11370-11375.https://doi.org/10.1073/pnas.1004248107
Eytan, E., Wang, K., Miniowitz-Shemtov, S., Sitry-Shevah, D., Kaisari, S., Yen, T. J., . . . Hershko, A. (2014). Disassembly of mitotic checkpoint complexes by the joint action of the AAA-ATPase TRIP13 and p31(comet). Proc Natl Acad Sci U S A, 111(33), 12019-12024.https://doi.org/10.1073/pnas.1412901111
Falk, J. E., Chan, A. C., Hoffmann, E., & Hochwagen, A. (2010). A Mec1- and PP4-dependent checkpoint couples centromere pairing to meiotic recombination. Dev Cell, 19(4), 599-611.https://doi.org/10.1016/j.devcel.2010.09.006
Ferrari, S. R., Grubb, J., & Bishop, D. K. (2009). The Mei5-Sae3 protein complex mediates Dmc1 activity in Saccharomyces cerevisiae. J Biol Chem, 284(18), 11766-11770. https://doi.org/10.1074/jbc.C900023200
Freeman, A. K., & Monteiro, A. N. (2010). Phosphatases in the cellular response to DNA damage. Cell Commun Signal, 8, 27. https://doi.org/10.1186/1478-811X-8-27
Friedman, D. B., Hollingsworth, N. M., & Byers, B. (1994). Insertional mutations in the yeast HOP1 gene: evidence for multimeric assembly in meiosis. Genetics, 136(2), 449-464.
Gobbini, E., Cassani, C., Villa, M., Bonetti, D., & Longhese, M. P. (2016). Functions and regulation of the MRX complex at DNA double-strand breaks. Microb Cell, 3(8), 329-337.https://doi.org/10.15698/mic2016.08.517
Grushcow, J. M., Holzen, T. M., Park, K. J., Weinert, T., Lichten, M., & Bishop, D.K. (1999). Saccharomyces cerevisiae checkpoint genes MEC1, RAD17 and RAD24 are required for normal meiotic recombination partner choice. Genetics, 153(2), 607-620. https://doi.org/10.1093/genetics/153.2.607
Hayase, A., Takagi, M., Miyazaki, T., Oshiumi, H., Shinohara, M., & Shinohara, A. (2004). A protein complex containing Mei5 and Sae3 promotes the assembly of the meiosis-specific RecA homolog Dmc1. Cell, 119(7), 927- 940. https://doi.org/10.1016/j.cell.2004.10.031
Herruzo, E., Ontoso, D., González-Arranz, S., Cavero, S., Lechuga, A., & San- Segundo, P. A. (2016). The Pch2 AAA+ ATPase promotes phosphorylation of the Hop1 meiotic checkpoint adaptor in response to synaptonemal complex defects. Nucleic Acids Res, 44(16), 7722-7741. https://doi.org/10.1093/nar/gkw506
Hoffmann, R., Jung, S., Ehrmann, M., & Hofer, H. W. (1994). The Saccharomyces cerevisiae gene PPH3 encodes a protein phosphatase with properties different from PPX, PP1 and PP2A. Yeast, 10(5), 567-578. https://doi.org/10.1002/yea.320100502
Hollingsworth, N. M., & Byers, B. (1989). HOP1: a yeast meiotic pairing gene.Genetics, 121(3), 445-462.
Hollingsworth, N. M., Goetsch, L., & Byers, B. (1990). The HOP1 gene encodes a meiosis-specific component of yeast chromosomes. Cell, 61(1), 73-84. https://doi.org/10.1016/0092-8674(90)90216-2
Hollingsworth, N. M., & Johnson, A. D. (1993). A conditional allele of the Saccharomyces cerevisiae HOP1 gene is suppressed by overexpression of two other meiosis-specific genes: RED1 and REC104. Genetics, 133(4), 785-797. https://doi.org/10.1093/genetics/133.4.785
Hollingsworth, N. M., & Ponte, L. (1997). Genetic interactions between HOP1, RED1 and MEK1 suggest that MEK1 regulates assembly of axial element components during meiosis in the yeast Saccharomyces cerevisiae. Genetics, 147(1), 33-42.
Hollingsworth, N. M., Ponte, L., & Halsey, C. (1995). MSH5, a novel MutS homolog, facilitates meiotic reciprocal recombination between homologs in Saccharomyces cerevisiae but not mismatch repair. Genes Dev, 9(14), 1728-1739. https://doi.org/10.1101/gad.9.14.1728
Holm, P. B., Rasmussen, S. W., & von Wettstein, D. (1979). The possible contribution of electron microscopy to the understanding of the mechanism of non-disjunction in man. Mutat Res, 61(1), 115-119. https://doi.org/10.1016/0027-5107(79)90012-5
Hong, E. J., & Roeder, G. S. (2002). A role for Ddc1 in signaling meiotic double- strand breaks at the pachytene checkpoint. Genes Dev, 16(3), 363-376. https://doi.org/10.1101/gad.938102
Hunter, N., & Kleckner, N. (2001). The single-end invasion: an asymmetric intermediate at the double-strand break to double-holliday junction transition of meiotic recombination. Cell, 106(1), 59-70. https://doi.org/10.1016/s0092-8674(01)00430-5
Hustedt, N., Seeber, A., Sack, R., Tsai-Pflugfelder, M., Bhullar, B., Vlaming, H., . . . Gasser, S. M. (2015). Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling. Mol Cell, 57(2), 273-289. https://doi.org/10.1016/j.molcel.2014.11.016
Iwasaki, D., Hayashihara, K., Shima, H., Higashide, M., Terasawa, M., Gasser, S. M., & Shinohara, M. (2016). The MRX Complex Ensures NHEJ Fidelity through Multiple Pathways Including Xrs2-FHA-Dependent Tel1 Activation. PLoS Genet, 12(3), e1005942.https://doi.org/10.1371/journal.pgen.1005942
Jessop, L., Rockmill, B., Roeder, G. S., & Lichten, M. (2006). Meiotic chromosome synapsis-promoting proteins antagonize the anti-crossover activity of sgs1. PLoS Genet, 2(9), e155. https://doi.org/10.1371/journal.pgen.0020155
Karányi, Z., Halász, L., Acquaviva, L., Jónás, D., Hetey, S., Boros-Oláh, B., . . . Székvölgyi, L. (2018). Nuclear dynamics of the Set1C subunit Spp1 prepares meiotic recombination sites for break formation. J Cell Biol, 217(10), 3398-3415. https://doi.org/10.1083/jcb.201712122
Keeney, S., Giroux, C. N., & Kleckner, N. (1997). Meiosis-specific DNA double- strand breaks are catalyzed by Spo11, a member of a widely conserved protein family. Cell, 88(3), 375-384. https://doi.org/10.1016/s0092-8674(00)81876-0
Keogh, M. C., Kim, J. A., Downey, M., Fillingham, J., Chowdhury, D., Harrison, J. C., . . . Krogan, N. J. (2006). A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery. Nature, 439(7075), 497-501.https://doi.org/10.1038/nature04384
Khan, K., Madhavan, T. P., Kshirsagar, R., Boosi, K. N., Sadhale, P., & Muniyappa,
K. (2013). N-terminal disordered domain of Saccharomyces cerevisiae Hop1 protein is dispensable for DNA binding, bridging, and synapsis of double-stranded DNA molecules but is necessary for spore formation. Biochemistry, 52(31), 5265-5279. https://doi.org/10.1021/bi4005528
Klapholz, S., Waddell, C. S., & Esposito, R. E. (1985). The role of the SPO11 gene in meiotic recombination in yeast. Genetics, 110(2), 187-216.
Klein, F., Mahr, P., Galova, M., Buonomo, S. B., Michaelis, C., Nairz, K., & Nasmyth, K. (1999). A central role for cohesins in sister chromatid cohesion, formation of axial elements, and recombination during yeast meiosis. Cell, 98(1), 91-103. https://doi.org/10.1016/S0092-8674(00)80609-1
Kugou, K., & Ohta, K. (2009). Genome-wide high-resolution chromatin immunoprecipitation of meiotic chromosomal proteins in Saccharomyces cerevisiae. Methods Mol Biol, 557, 285-304. https://doi.org/10.1007/978-1-59745-527-5_18
Lai, Y. J., Lin, F. M., Chuang, M. J., Shen, H. J., & Wang, T. F. (2011). Genetic requirements and meiotic function of phosphorylation of the yeast axial element protein Red1. Mol Cell Biol, 31(5), 912-923. https://doi.org/10.1128/MCB.00895-10
Lee, B. H., & Amon, A. (2003). Polo kinase--meiotic cell cycle coordinator. Cell Cycle, 2(5), 400-402.
Leem, S. H., & Ogawa, H. (1992). The MRE4 gene encodes a novel protein kinase homologue required for meiotic recombination in Saccharomyces cerevisiae. Nucleic Acids Res, 20(3), 449-457.https://doi.org/10.1093/nar/20.3.449
Li, J., Hooker, G. W., & Roeder, G. S. (2006). Saccharomyces cerevisiae Mer2, Mei4 and Rec114 form a complex required for meiotic double-strand break formation. Genetics, 173(4), 1969-1981.https://doi.org/10.1534/genetics.106.058768
Liu, Y., Gaines, W. A., Callender, T., Busygina, V., Oke, A., Sung, P., . . . Hollingsworth, N. M. (2014). Down-regulation of Rad51 activity during meiosis in yeast prevents competition with Dmc1 for repair of double- strand breaks. PLoS Genet, 10(1), e1004005. https://doi.org/10.1371/journal.pgen.1004005
Lo, Y. H., Chuang, C. N., & Wang, T. F. (2014). Pch2 prevents Mec1/Tel1- mediated Hop1 phosphorylation occurring independently of Red1 in budding yeast meiosis. PLoS One, 9(1), e85687. https://doi.org/10.1371/journal.pone.0085687
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., & Richmond, T. J. (1997). Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature, 389(6648), 251-260. https://doi.org/10.1038/38444
Manfrini, N., Guerini, I., Citterio, A., Lucchini, G., & Longhese, M. P. (2010). Processing of meiotic DNA double strand breaks requires cyclin- dependent kinase and multiple nucleases. J Biol Chem, 285(15), 11628- 11637. https://doi.org/10.1074/jbc.M110.104083
Mantiero, D., Clerici, M., Lucchini, G., & Longhese, M. P. (2007). Dual role for Saccharomyces cerevisiae Tel1 in the checkpoint response to double- strand breaks. EMBO Rep, 8(4), 380-387.https://doi.org/10.1038/sj.embor.7400911
Mao-Draayer, Y., Galbraith, A. M., Pittman, D. L., Cool, M., & Malone, R. E. (1996). Analysis of meiotic recombination pathways in the yeast Saccharomyces cerevisiae. Genetics, 144(1), 71-86.
McMahill, M. S., Sham, C. W., & Bishop, D. K. (2007). Synthesis-dependent strand annealing in meiosis. PLoS Biol, 5(11), e299. https://doi.org/10.1371/journal.pbio.0050299
Mimitou, E. P., & Symington, L. S. (2009). DNA end resection: many nucleases make light work. DNA Repair (Amst), 8(9), 983-995. https://doi.org/10.1016/j.dnarep.2009.04.017
Muller, H., Scolari, V. F., Agier, N., Piazza, A., Thierry, A., Mercy, G., . . . Koszul,R. (2018). Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C. Mol Syst Biol, 14(7), e8293. https://doi.org/10.15252/msb.20188293
Murakami, H., Lam, I., Huang, P. C., Song, J., van Overbeek, M., & Keeney, S. (2020). Multilayered mechanisms ensure that short chromosomes recombine in meiosis. Nature, 582(7810), 124-128.https://doi.org/10.1038/s41586-020-2248-2
Nakada, S., Chen, G. I., Gingras, A. C., & Durocher, D. (2008). PP4 is a gamma H2AX phosphatase required for recovery from the DNA damage checkpoint. EMBO Rep, 9(10), 1019-1026.https://doi.org/10.1038/embor.2008.162
Nakagawa, T., & Kolodner, R. D. (2002). Saccharomyces cerevisiae Mer3 is a DNA helicase involved in meiotic crossing over. Mol Cell Biol, 22(10), 3281-3291. https://doi.org/10.1128/MCB.22.10.3281-3291.2002
Nakagawa, T., & Ogawa, H. (1999). The Saccharomyces cerevisiae MER3 gene, encoding a novel helicase-like protein, is required for crossover control in meiosis. EMBO J, 18(20), 5714-5723.https://doi.org/10.1093/emboj/18.20.5714
Niu, H., Wan, L., Baumgartner, B., Schaefer, D., Loidl, J., & Hollingsworth, N. M. (2005). Partner choice during meiosis is regulated by Hop1-promoted dimerization of Mek1. Mol Biol Cell, 16(12), 5804-5818. https://doi.org/10.1091/mbc.e05-05-0465
Novak, J. E., Ross-Macdonald, P. B., & Roeder, G. S. (2001). The budding yeast Msh4 protein functions in chromosome synapsis and the regulation of crossover distribution. Genetics, 158(3), 1013-1025.
O'Neill, B. M., Szyjka, S. J., Lis, E. T., Bailey, A. O., Yates, J. R., Aparicio, O. M., & Romesberg, F. E. (2007). Pph3-Psy2 is a phosphatase complex required for Rad53 dephosphorylation and replication fork restart during recovery from DNA damage. Proc Natl Acad Sci U S A, 104(22), 9290-9295. https://doi.org/10.1073/pnas.0703252104
Panizza, S., Mendoza, M. A., Berlinger, M., Huang, L., Nicolas, A., Shirahige, K., & Klein, F. (2011). Spo11-accessory proteins link double-strand break sites to the chromosome axis in early meiotic recombination. Cell, 146(3), 372-383. https://doi.org/10.1016/j.cell.2011.07.003
Paques, F., & Haber, J. E. (1999). Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev, 63(2), 349-404. https://doi.org/10.1128/MMBR.63.2.349-404.1999
Penedos, A., Johnson, A. L., Strong, E., Goldman, A. S., Carballo, J. A., & Cha,
R. S. (2015). Essential and Checkpoint Functions of Budding Yeast ATM and ATR during Meiotic Prophase Are Facilitated by Differential Phosphorylation of a Meiotic Adaptor Protein, Hop1. PLoS One, 10(7), e0134297. https://doi.org/10.1371/journal.pone.0134297
Petukhova, G., Sung, P., & Klein, H. (2000). Promotion of Rad51-dependent D- loop formation by yeast recombination factor Rdh54/Tid1. Genes Dev,14(17), 2206-2215. https://doi.org/10.1101/gad.826100
Prieler, S., Penkner, A., Borde, V., & Klein, F. (2005). The control of Spo11's interaction with meiotic recombination hotspots. Genes Dev, 19(2), 255-269. https://doi.org/10.1101/gad.321105
Raina, V. B., & Vader, G. (2020). Homeostatic Control of Meiotic Prophase Checkpoint Function by Pch2 and Hop1. Curr Biol, 30(22), 4413- 4424.e4415. https://doi.org/10.1016/j.cub.2020.08.064
Redon, C., Pilch, D. R., Rogakou, E. P., Orr, A. H., Lowndes, N. F., & Bonner, W.M. (2003). Yeast histone 2A serine 129 is essential for the efficient repair of checkpoint-blind DNA damage. EMBO Rep, 4(7), 678-684. https://doi.org/10.1038/sj.embor.embor871
Rockmill, B., & Roeder, G. S. (1988). RED1: a yeast gene required for the segregation of chromosomes during the reductional division of meiosis. Proc Natl Acad Sci U S A, 85(16), 6057-6061. https://doi.org/10.1073/pnas.85.16.6057
Rockmill, B., & Roeder, G. S. (1991). A meiosis-specific protein kinase homolog required for chromosome synapsis and recombination. Genes Dev, 5(12B), 2392-2404. https://doi.org/10.1101/gad.5.12b.2392
Roeder, G. S. (1990). Chromosome synapsis and genetic recombination: their roles in meiotic chromosome segregation. Trends Genet, 6(12), 385-389. https://doi.org/10.1016/0168-9525(90)90297-j
Ross-Macdonald, P., & Roeder, G. S. (1994). Mutation of a meiosis-specific MutS homolog decreases crossing over but not mismatch correction. Cell, 79(6), 1069-1080. https://doi.org/10.1016/0092-8674(94)90037-x
San-Segundo, P. A., & Roeder, G. S. (1999). Pch2 links chromatin silencing to meiotic checkpoint control. Cell, 97(3), 313-324.https://doi.org/10.1016/s0092-8674(00)80741-2
Sasanuma, H., Furihata, Y., Shinohara, M., & Shinohara, A. (2013). Remodeling of the Rad51 DNA strand-exchange protein by the Srs2 helicase. Genetics, 194(4), 859-872. https://doi.org/10.1534/genetics.113.150615
Sasanuma, H., Murakami, H., Fukuda, T., Shibata, T., Nicolas, A., & Ohta, K. (2007). Meiotic association between Spo11 regulated by Rec102, Rec104 and Rec114. Nucleic Acids Res, 35(4), 1119-1133. https://doi.org/10.1093/nar/gkl1162
Schalbetter, S. A., Fudenberg, G., Baxter, J., Pollard, K. S., & Neale, M. J. (2019). Principles of meiotic chromosome assembly revealed in S. cerevisiae. Nat Commun, 10(1), 4795. https://doi.org/10.1038/s41467-019-12629-0
Schwacha, A., & Kleckner, N. (1994). Identification of joint molecules that form frequently between homologs but rarely between sister chromatids during yeast meiosis. Cell, 76(1), 51-63. https://doi.org/10.1016/0092-8674(94)90172-4
Schwacha, A., & Kleckner, N. (1997). Interhomolog bias during meiotic recombination: meiotic functions promote a highly differentiated interhomolog-only pathway. Cell, 90(6), 1123-1135.https://doi.org/10.1016/s0092-8674(00)80378-5
Shi, Y. (2009). Serine/threonine phosphatases: mechanism through structure.Cell, 139(3), 468-484. https://doi.org/10.1016/j.cell.2009.10.006
Shinohara, M., Bishop, D. K., & Shinohara, A. (2019). Distinct Functions in Regulation of Meiotic Crossovers for DNA Damage Response Clamp Loader Rad24(Rad17) and Mec1(ATR) Kinase. Genetics, 213(4), 1255- 1269. https://doi.org/10.1534/genetics.119.302427
Shinohara, M., Gasior, S. L., Bishop, D. K., & Shinohara, A. (2000). Tid1/Rdh54 promotes colocalization of rad51 and dmc1 during meiotic recombination.Proc Natl Acad Sci U S A, 97(20), 10814-10819.https://doi.org/10.1073/pnas.97.20.10814
Shinohara, M., Hayashihara, K., Grubb, J. T., Bishop, D. K., & Shinohara, A. (2015). DNA damage response clamp 9-1-1 promotes assembly of ZMM proteins for formation of crossovers and synaptonemal complex. J Cell Sci, 128(8), 1494-1506. https://doi.org/10.1242/jcs.161554
Shinohara, M., Oh, S. D., Hunter, N., & Shinohara, A. (2008). Crossover assurance and crossover interference are distinctly regulated by the ZMM proteins during yeast meiosis. Nat Genet, 40(3), 299-309. https://doi.org/10.1038/ng.83
Shinohara, M., Sakai, K., Ogawa, T., & Shinohara, A. (2003). The mitotic DNA damage checkpoint proteins Rad17 and Rad24 are required for repair of double-strand breaks during meiosis in yeast. Genetics, 164(3), 855-865. Shinohara, M., & Shinohara, A. (2013). Multiple pathways suppress non-allelic homologous recombination during meiosis in Saccharomyces cerevisiae.PLoS One, 8(4), e63144. https://doi.org/10.1371/journal.pone.0063144
Smith, A. V., & Roeder, G. S. (1997). The yeast Red1 protein localizes to the cores of meiotic chromosomes. J Cell Biol, 136(5), 957-967. https://doi.org/10.1083/jcb.136.5.957
Sollier, J., Lin, W., Soustelle, C., Suhre, K., Nicolas, A., Géli, V., & de La Roche Saint-André, C. (2004). Set1 is required for meiotic S-phase onset, double- strand break formation and middle gene expression. EMBO J, 23(9), 1957- 1967. https://doi.org/10.1038/sj.emboj.7600204
Sommermeyer, V., Béneut, C., Chaplais, E., Serrentino, M. E., & Borde, V. (2013). Spp1, a member of the Set1 Complex, promotes meiotic DSB formation in promoters by tethering histone H3K4 methylation sites to chromosome axes. Mol Cell, 49(1), 43-54. https://doi.org/10.1016/j.molcel.2012.11.008
Storlazzi, A., Xu, L., Schwacha, A., & Kleckner, N. (1996). Synaptonemal complex (SC) component Zip1 plays a role in meiotic recombination independent of SC polymerization along the chromosomes. Proc Natl Acad Sci U S A, 93(17), 9043-9048.https://doi.org/10.1073/pnas.93.17.9043
Subramanian, V. V., MacQueen, A. J., Vader, G., Shinohara, M., Sanchez, A., Borde, V., . . . Hochwagen, A. (2016). Chromosome Synapsis Alleviates Mek1-Dependent Suppression of Meiotic DNA Repair. PLoS Biol, 14(2), e1002369. https://doi.org/10.1371/journal.pbio.1002369
Sun, X., Huang, L., Markowitz, T. E., Blitzblau, H. G., Chen, D., Klein, F., & Hochwagen, A. (2015). Transcription dynamically patterns the meiotic chromosome-axis interface. Elife, 4. https://doi.org/10.7554/eLife.07424
Sym, M., Engebrecht, J. A., & Roeder, G. S. (1993). ZIP1 is a synaptonemal complex protein required for meiotic chromosome synapsis. Cell, 72(3), 365-378. https://doi.org/10.1016/0092-8674(93)90114-6
Traven, A., & Heierhorst, J. (2005). SQ/TQ cluster domains: concentrated ATM/ATR kinase phosphorylation site regions in DNA-damage-response proteins. Bioessays, 27(4), 397-407. https://doi.org/10.1002/bies.20204
Tsubouchi, H., & Roeder, G. S. (2006). Budding yeast Hed1 down-regulates the mitotic recombination machinery when meiotic recombination is impaired. Genes Dev, 20(13), 1766-1775. https://doi.org/10.1101/gad.1422506
Tsubouchi, T., Zhao, H., & Roeder, G. S. (2006). The meiosis-specific zip4 protein regulates crossover distribution by promoting synaptonemal complex formation together with zip2. Dev Cell, 10(6), 809-819.https://doi.org/10.1016/j.devcel.2006.04.003
Usui, T., Ogawa, H., & Petrini, J. H. (2001). A DNA damage response pathway controlled by Tel1 and the Mre11 complex. Mol Cell, 7(6), 1255-1266. https://doi.org/10.1016/s1097-2765(01)00270-2
van den Berg, J., G Manjón, A., Kielbassa, K., Feringa, F. M., Freire, R., & Medema, R. H. (2018). A limited number of double-strand DNA breaks is sufficient to delay cell cycle progression. Nucleic Acids Res, 46(19), 10132-10144. https://doi.org/10.1093/nar/gky786
Watanabe, Y., & Nurse, P. (1999). Cohesin Rec8 is required for reductional chromosome segregation at meiosis. Nature, 400(6743), 461-464. https://doi.org/10.1038/22774
West, A. M. V., Komives, E. A., & Corbett, K. D. (2018). Conformational dynamics of the Hop1 HORMA domain reveal a common mechanism with the spindle checkpoint protein Mad2. Nucleic Acids Res, 46(1), 279-292. https://doi.org/10.1093/nar/gkx1196
Wojtasz, L., Daniel, K., Roig, I., Bolcun-Filas, E., Xu, H., Boonsanay, V., Toth,A. (2009). Mouse HORMAD1 and HORMAD2, two conserved meiotic chromosomal proteins, are depleted from synapsed chromosome axes with the help of TRIP13 AAA-ATPase. PLoS Genet, 5(10), e1000702. https://doi.org/10.1371/journal.pgen.1000702
Woltering, D., Baumgartner, B., Bagchi, S., Larkin, B., Loidl, J., de los Santos, T., & Hollingsworth, N. M. (2000). Meiotic segregation, synapsis, and recombination checkpoint functions require physical interaction between the chromosomal proteins Red1p and Hop1p. Mol Cell Biol, 20(18), 6646- 6658. https://doi.org/10.1128/MCB.20.18.6646-6658.2000
Wu, H. Y., & Burgess, S. M. (2006). Two distinct surveillance mechanisms monitor meiotic chromosome metabolism in budding yeast. Curr Biol, 16(24), 2473-2479. https://doi.org/10.1016/j.cub.2006.10.069
Yadav, V. K., & Claeys Bouuaert, C. (2021). Mechanism and Control of Meiotic DNA Double-Strand Break Formation in. Front Cell Dev Biol, 9, 642737. https://doi.org/10.3389/fcell.2021.642737
Zhang, Y., Suzuki, T., Li, K., Gothwal, S. K., Shinohara, M., & Shinohara, A. (2020). Genetic Interactions of Histone Modification Machinery Set1 and PAF1C with the Recombination Complex Rec114-Mer2-Mei4 in the Formation of Meiotic DNA Double-Strand Breaks. Int J Mol Sci, 21(8). https://doi.org/10.3390/ijms21082679
Zhao, X., Muller, E. G., & Rothstein, R. (1998). A suppressor of two essential checkpoint genes identifies a novel protein that negatively affects dNTP pools. Mol Cell, 2(3), 329-340. https://doi.org/10.1016/s1097-2765(00)80277-4
Zhu, Z., Bani Ismail, M., Shinohara, M., & Shinohara, A. (2021). SCF. Life Sci Alliance, 4(2). https://doi.org/10.26508/lsa.202000933
Zhu, Z., Chung, W. H., Shim, E. Y., Lee, S. E., & Ira, G. (2008). Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends. Cell, 134(6), 981-994. https://doi.org/10.1016/j.cell.2008.08.037
Zhu, Z., Mori, S., Oshiumi, H., Matsuzaki, K., Shinohara, M., & Shinohara, A. (2010). Cyclin-dependent kinase promotes formation of the synaptonemal complex in yeast meiosis. Genes Cells, 15(10), 1036-1050. https://doi.org/10.1111/j.1365-2443.2010.01440.x