Adachi, H. The role of clustered protocadherin gamma in somatostatin-positive inhibitory neurons in the mouse barrel cortex during early stage of postnatal development. In preparation.
Ariga, R. Gamma-Protocadherins regulate cortical interneuron function. In preparation.
Atallah, B. V., Bruns, W., Carandini, M., & Scanziani, M. (2012). Parvalbumin-expressing interneurons linearly transform cortical responses to visual stimuli. Neuron, 73(1), 159-170.
Briggs, F. (2010). Organizing principles of cortical layer 6. Frontiers in neural circuits, 4, 3.
Burkhalter, A. H. (2008). Many specialists for suppressing cortical excitation. Frontiers in neuroscience, 2, 26.
Carriere, C. H., Wang, W. X., Sing, A. D., Fekete, A., Jones, B. E., Yee, Y., ... & Lefebvre, J. L. (2020). The γ-Protocadherins regulate the survival of GABAergic interneurons during developmental cell death. Journal of Neuroscience, 40(45), 8652-8668.
Celio, M. R. (1986). Parvalbumin in most γ-aminobutyric acid-containing neurons of the rat cerebral cortex. Science, 231(4741), 995-997.
DeFelipe, J. (1997). Types of neurons, synaptic connections and chemical characteristics of cells immunoreactive for calbindin-D28K, parvalbumin and calretinin in the neocortex. Journal of chemical neuroanatomy, 14(1), 1-19.
Defelipe, J., González‐Albo, M. C., Del Río, M. R., & Elston, G. N. (1999). Distribution and patterns of connectivity of interneurons containing calbindin, calretinin, and parvalbumin in visual areas of the occipital and temporal lobes of the macaque monkey. Journal of Comparative Neurology, 412(3), 515-526.
D’Souza, R. D., Bista, P., Meier, A. M., Ji, W., & Burkhalter, A. (2019). Spatial clustering of inhibition in mouse primary visual cortex. Neuron, 104(3), 588-600.
Esumi, S., Kakazu, N., Taguchi, Y., Hirayama, T., Sasaki, A., Hirabayashi, T., ... & Yagi, T. (2005). Monoallelic yet combinatorial expression of variable exons of the protocadherin-α gene cluster in single neurons. Nature genetics, 37(2), 171-176.
Gonchar, Y., & Burkhalter, A. (1997). Three distinct families of GABAergic neurons in rat visual cortex. Cerebral cortex (New York, NY: 1991), 7(4), 347-358.
Gouwens, N. W., Sorensen, S. A., Berg, J., Lee, C., Jarsky, T., Ting, J., ... & Koch, C. (2019). Classification of electrophysiological and morphological neuron types in the mouse visual cortex. Nature neuroscience, 22(7), 1182-1195.
Haas, I. G., Frank, M., Véron, N., & Kemler, R. (2005). Presenilin-dependent processing and nuclear function of γ-protocadherins. Journal of Biological Chemistry, 280(10), 9313-9319.
Hayashi, T., Ozaki, H., Sasagawa, Y., Umeda, M., Danno, H., & Nikaido, I. (2018). Single-cell full- length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs. Nature communications, 9(1), 1-16.
Hofer, S. B., Ko, H., Pichler, B., Vogelstein, J., Ros, H., Zeng, H., ... & Mrsic-Flogel, T. D. (2011). Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nature neuroscience, 14(8), 1045-1052.
Ishikawa, A. W., Komatsu, Y., & Yoshimura, Y. (2014). Experience-dependent emergence of fine- scale networks in visual cortex. Journal of Neuroscience, 34(37), 12576-12586.
Kaneko, R., Kato, H., Kawamura, Y., Esumi, S., Hirayama, T., Hirabayashi, T., & Yagi, T. (2006). Allelic gene regulation of Pcdh-α and Pcdh-γ clusters involving both monoallelic and biallelic expression in single Purkinje cells. Journal of Biological Chemistry, 281(41), 30551-30560.
Kawaguchi, Y., & Kubota, Y. (1997). GABAergic cell subtypes and their synaptic connections in rat frontal cortex. Cerebral cortex (New York, NY: 1991), 7(6), 476-486.
Kisvárday, Z. F., & Eysel, U. T. (1993). Functional and structural topography of horizontal inhibitory connections in cat visual cortex. European Journal of Neuroscience, 5(12), 1558-1572.
Ko, H., Cossell, L., Baragli, C., Antolik, J., Clopath, C., Hofer, S. B., & Mrsic-Flogel, T. D. (2013). The emergence of functional microcircuits in visual cortex. Nature, 496(7443), 96-100.
Kohmura, N., Senzaki, K., Hamada, S., Kai, N., Yasuda, R., Watanabe, M., ... & Yagi, T. (1998). Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex. Neuron, 20(6), 1137-1151.
Kubota, Y., Karube, F., Nomura, M., & Kawaguchi, Y. (2016). The diversity of cortical inhibitory synapses. Frontiers in neural circuits, 10, 27.
Leon, W. R. M., Spatazza, J., Rakela, B., Chatterjee, A., Pande, V., Maniatis, T., ... & Alvarez- Buylla, A. (2020). Clustered gamma-protocadherins regulate cortical interneuron programmed cell death. Elife, 9, e55374.
Markram, H., Toledo-Rodriguez, M., Wang, Y., Gupta, A., Silberberg, G., & Wu, C. (2004). Interneurons of the neocortical inhibitory system. Nature reviews neuroscience, 5(10), 793-807.
Masuda, H. Patch-RamDA-seq reveals the single-cell gene expression patterns of clustered protocadherins and their relationship with the neural connections and cell lineage. In preparation.
McColgan, P., Joubert, J., Tabrizi, S. J., & Rees, G. (2020). The human motor cortex microcircuit: insights for neurodegenerative disease. Nature Reviews Neuroscience, 21(8), 401-415.
Molumby, M. J., Anderson, R. M., Newbold, D. J., Koblesky, N. K., Garrett, A. M., Schreiner, D., ... & Weiner, J. A. (2017). γ-protocadherins interact with neuroligin-1 and negatively regulate dendritic spine morphogenesis. Cell reports, 18(11), 2702-2714.
Peng, Y., Barreda Tomas, F. J., Pfeiffer, P., Drangmeister, M., Schreiber, S., Vida, I., & Geiger, J. R. (2021). Spatially structured inhibition defined by polarized parvalbumin interneuron axons promotes head direction tuning. Science Advances, 7(25), eabg4693.
Reiss, K., Maretzky, T., Haas, I. G., Schulte, M., Ludwig, A., Frank, M., & Saftig, P. (2006). Regulated ADAM10-dependent ectodomain shedding of γ-protocadherin C3 modulates cell-cell adhesion. Journal of Biological Chemistry, 281(31), 21735-21744.
Runyan, C. A., & Sur, M. (2013). Response selectivity is correlated to dendritic structure in parvalbumin-expressing inhibitory neurons in visual cortex. Journal of Neuroscience, 33(28), 11724-11733.
Schreiner, D., & Weiner, J. A. (2010). Combinatorial homophilic interaction between γ- protocadherin multimers greatly expands the molecular diversity of cell adhesion. Proceedings of the National Academy of Sciences, 107(33), 14893-14898.
Shipp, S. (2007). Structure and function of the cerebral cortex. Current Biology, 17(12), R443- R449.
Southwell, D. G., Paredes, M. F., Galvao, R. P., Jones, D. L., Froemke, R. C., Sebe, J. Y., ... & Alvarez-Buylla, A. (2012). Intrinsically determined cell death of developing cortical interneurons. Nature, 491(7422), 109-113.
Steffen, D. M., Ferri, S. L., Marcucci, C. G., Blocklinger, K. L., Molumby, M. J., Abel, T., & Weiner, J. A. (2021). The γ-protocadherins interact physically and functionally with neuroligin-2 to negatively regulate inhibitory synapse density and are required for normal social interaction. Molecular neurobiology, 58(6), 2574-2589.
Südhof, T. C. (2008). Neuroligins and neurexins link synaptic function to cognitive disease. Nature, 455(7215), 903-911.
Tasic, B., Nabholz, C. E., Baldwin, K. K., Kim, Y., Rueckert, E. H., Ribich, S. A., ... & Maniatis, T. (2002). Promoter choice determines splice site selection in protocadherin α and γ pre-mRNA splicing. Molecular cell, 10(1), 21-33.
Tarusawa, E., Sanbo, M., Okayama, A., Miyashita, T., Kitsukawa, T., Hirayama, T., ... & Yoshimura,Y. (2016). Establishment of high reciprocal connectivity between clonal cortical neurons is regulated by the Dnmt3b DNA methyltransferase and clustered protocadherins. BMC biology, 14(1), 1-19.
Thu, C. A., Chen, W. V., Rubinstein, R., Chevee, M., Wolcott, H. N., Felsovalyi, K. O., ... & Maniatis, T. (2014). Single-cell identity generated by combinatorial homophilic interactions between α, β, and γ protocadherins. Cell, 158(5), 1045-1059.
Wang, X., Su, H., & Bradley, A. (2002). Molecular mechanisms governing Pcdh-γ gene expression: Evidence for a multiple promoter and cis-alternative splicing model. Genes & development, 16(15), 1890-1905.
Wonders, C. P., & Anderson, S. A. (2006). The origin and specification of cortical interneurons.Nature Reviews Neuroscience, 7(9), 687-696.
Wong, F. K., Bercsenyi, K., Sreenivasan, V., Portalés, A., Fernández-Otero, M., & Marín, O. (2018). Pyramidal cell regulation of interneuron survival sculpts cortical networks. Nature, 557(7707), 668- 673.
Wu, Q., & Maniatis, T. (1999). A striking organization of a large family of human neural cadherin- like cell adhesion genes. Cell, 97(6), 779-790.
Wu, Q., Zhang, T., Cheng, J. F., Kim, Y., Grimwood, J., Schmutz, J., ... & Maniatis, T. (2001). Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome research, 11(3), 389-404.
Yagi, T., & Takeichi, M. (2000). Cadherin superfamily genes: functions, genomic organization, and neurologic diversity. Genes & development, 14(10), 1169-1180.
Yizhar, O., Fenno, L. E., Prigge, M., Schneider, F., Davidson, T. J., O’shea, D. J., ... & Deisseroth,K. (2011). Neocortical excitation/inhibition balance in information processing and social dysfunction. Nature, 477(7363), 171-178.
Yoshimura, Y., & Callaway, E. M. (2005). Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity. Nature neuroscience, 8(11), 1552-1559.
Yu, Y. C., Bultje, R. S., Wang, X., & Shi, S. H. (2009). Specific synapses develop preferentially among sister excitatory neurons in the neocortex. Nature, 458(7237), 501-504.
Yu, Y. C., He, S., Chen, S., Fu, Y., Brown, K. N., Yao, X. H., ... & Shi, S. H. (2012). Preferential electrical coupling regulates neocortical lineage-dependent microcircuit assembly. Nature, 486(7401), 113-117.
Znamenskiy, P., Kim, M. H., Muir, D. R., Iacaruso, M. F., Hofer, S. B., & Mrsic-Flogel, T. D. (2018). Functional selectivity and specific connectivity of inhibitory neurons in primary visual cortex. Biorxiv, 294835.