Adams, M. J., Lefkowitz, E. J., King, A. M. Q., et al. (2017). Changes to taxonomy and the international code of virus classification and nomenclature ratified by the International Committee on Taxonomy of Viruses. Arch Virol. 162, 2505–2538. doi: 10.1007/s00705-017-3358-5
Aoki, N., Moriyama, H., Kodama, M., Arie, T., Teraoka, T., and Fukuhara, T. (2009). A novel mycovirus associated with four double-stranded RNAs affects host fungal growth in Alternaria alternate. Virus Res. 140, 179-187. doi: 10.1016/j.virusres.2008.12.003
Aragon-Caballero, L. M., Hurtado-Gonzales, O. P., Flores-Torres, J. G., Apaza-Tapia, W., and Lamour, K. H. (2008). First Report of Phytophthora nicotianae Causing Asparagus Spear and Root Rot in Peru. Plant Dis. 92, 982.2–982.2. doi: org/10.1094/PDIS-92-6-0982B
Ark, P. A., and Barret, J. T. (1938). Phytophthora rot of asparagus in California. Phytopathology. 28, 754– 756.
Blair, J. E., Coffey, M. D., Park, S-Y., Geiser, D. M., and Kang, S. (2008). A multi-locus phylogeny forPhytophthora utilizing markers derived from complete genome sequences. Fungal Genet Biol. 45, 266–77. doi: 10.1016/j.fgb.2007.10.010
Cai, G., Krychiw, J. F., Myers, K., Fry, W. E., and Hillman, B. I. (2013). A new virus from the plant pathogenic oomycete Phytophthora infestans with an 8 kb dsRNA genome: the sixth member of a proposed new virusgenus. Virology. 435, 341–349. doi: org/10.1016/j.virol.2012.10.012
Cai, G., Myers, K., Fry, W. E., and Hillman, B. I. (2012). A member of the virus family Narnaviridae from the plant pathogenic oomycete Phytophthora infestans. Arch Virol. 157, 165–169. doi: 10.1007/s00705-011-1126-5
Cai, G., Myers, K., Fry, W. E., and Hillman, B. I. (2019). Phytophthora infestans RNA virus 2, a novel RNA virus from Phytophthora infestans, does not belong to any known virus group. Arch Virol. 164, 567–572. doi: 10.1007/s00705-018-4050-0
Cai, G., Myers, K., Hillman, B. I., and Fry, W. E. (2009). A novel virus of the late bligt pathogen, Phytophthora infestans, with two RNA segments and a supergroup 1 RNA-dependent RNA polymerase. Virology. 392, 52–61. doi: org/10.1016/j.virol.2009.06.040
Cavalier-Smith, T., and Chao, E. E-Y. (2006). Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J Mol Evol. 62, 388–420. doi: 10.1007/s00239-004-0353-8
Cooke, D. E., Drenth, A., Duncan, J. M., Wagels, G., and Brasier, C. M. (2000). A Molecular Phylogeny of Phytophthora and Related Oomycetes. Fungal Genet Biol. 30, 17–32. doi: 10.1006/fgbi.2000.1202
Coutts, R. H. A. (2005). First report of an endornavirus in the Cucurbitaceae. Virus Genes. 31, 361–362. doi: 10.1007/s11262-005-3255-y
Crous, P W., Summerell, B A., Shivas, R G., Burgess, T I., Decock, C A., Dreyer, L L., et al. (2012).Fungal Planet description sheets: 107-127. Persoonia. 28, 138-182. doi: 10.3767/003158512X652633
Erwin, D.C. and Ribeiro, O.K. (1996). Phytophthora Diseases Worldwide. American Phytopathological Society. pp. 562, £90. ISBN 0-89054-212-0.
Falloon, P. G. (1982). Baiting, pathogenicity and distribution of Phytophthora megasperma var. sojae in New Zealand asparagus soils. N.Z. J. Agric. Res. 25, 425–429. doi: 10.1080/00288233.1982.10417907
Fisher, M. C., Hawkins, N. J., Sanglard, D., and Gurr, S. J. (2018). Worldwide emergence of resistance to antifungal drugs challenges human health and food security. Science. 360, 739–742. doi: 10.1126/science.aap7999i
Frohman, M. A., Dush, M. K., and Martin, G. R. (1988). Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA. 85, 8998-9002. doi: 10.1073/pnas.85.23.8998
Fukuhara, T., Koga, R., Aoki, N., Yuki, C., Yamamoto, N., Oyama, N., Udagawa, T., Horiuchi, H., Miyazaki, S., Higashi, Y., Takeshita, M., Ikeda, K., Arakawa, M., Matsumoto, N., and Moriyama,H. (2006). The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties. Arch Virol. 151, 995–1002. doi: 10.1007/s00705-005-0688-5
Ghabrial, S. A., Castón, J. R., Jiang, D., Nibert, M. L., and Suzuki, N. (2015). 50-plus years of fungal viruses. Virology. 356, 479–480. doi: 10.1016/j.virol.2015.02.034
Ghabrial, S. A., and Suzuki, N. (2009). Viruses of plant pathogenic fungi. Annu Rev Phytopathol. 47, 353–384. doi: 10.1146/annurev-phyto-080508-081932
Gisi, U., and Sierotzki, H. (2015). Oomycete Fungicides: Phenylamides, Quinone Outside Inhibitors, and Carboxylic Acid Amides. Fungicide Resistance in Plant Pathogens pp 145–174.
Grasse, W., Zipper, R., Totska, M., Spring, O. (2013). Plasmopara halstedii virus causes hypovirulence in Plasmopara halstedii, the downy mildew pathogen of the sunflower. Fungal Genet Biol. 57, 42-47. doi: 10.1016/j.fgb.2013.05.009
Grill, L. K., and Garger, S. J. (1981). Identification and characterization of double-stranded RNA associated with cytoplasmic male sterility in Vicia faba. Proc Natl Acad Sci U S A. 78, 7043–7046. doi: 10.1073/pnas.78.11.7043
Guindon, S., Dufayard, J-F., Lefort, V., Anisimova, M., Hordijk, W., Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 3, 307-321. doi: 10.1093/sysbio/syq010
Hacker, C.V., Brasier, C. M., and Buck, K. W. (2005). A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J Gen Virol. 86, 1561–1570. doi: 10.1099/vir.0.80808-0
Hendrix, J. W. (1970). Sterols in growth and reproduction of fungi. Ann Rev Phytopathol. 8, 111-130.
Hollomon D. W., Wood P. M., Reeve C., and Miguez M. (2005). Alternative oxidase and its impact on the activity of Qo and Qi site inhibitors, in Modern Fungicides and Antifungal Compounds IV, ed. by DehneHW, GisiU, Kuck KH, Russell PE and Lyr H. BCPC, Alton, Hants, UK, pp. 31–34.
Horiuchi, H., Moriyama, H., Fukuhara, T. (2003). Inheritance of Oryza sativa endornavirus in F1 and F2 hybrids between japonica and indica rice. Genes Genet. Syst. 78(3), 229-234. doi: 10.1266/ggs.78.229
Huang, S., Ghabrial, S.A., 1996. Organization and expression of the double-stranded RNA genome of Helminthosporium victoriae 190S virus, a totivirus infecting a plant pathogenic filamentous fungus. Proc. Natl. Acad. Sci. U.S.A. 93, 12541–12546.
Ikeda, K. I., Nakamura, H., and Matsumoto, N. (2003). Hypovirulent strain of the violet root rot fungus Helicobasidium mompa. J. Gen. Plant Pathol. 69, 385–390.
Ishii, H., Fountaine, J., Chung, W.-H., Kansako, M., Nishimura, K., Takahashi, K., and Oshima, M. (2009). Characterisation of QoI-resistant field isolates of Botrytis cinerea from citrus and strawberry. Pest Manag Sci. 65, 916-22. doi: 10.1002/ps.1773
Kim, J.-X., Jung, J.-E., Park, J.-A., Park, S.-M., Cha, B.-J., and Dae-Hyuk Kim, D.-H. (2012). Biological function of a novel chrysovirus, CnV1-BS122, in the Korean Cryphonectria nitschkei BS122 strain. J. Biosci. Bioeng. 115(1), 1-3. doi: 10.1016/j.jbiosc.2012.08.007
Kliejunas, J. T., and Ko, W. H. (1974). Effect of motility of Phytophthora palmivora zoospores on disease severity in Papaya seedlings and substrate colonization in soil. Phytopathology. 64, 426-428.
Ko, W. H., and Mary J. Chan. (1974). Infection and Colonization Potential of Sporangia, Zoospores, and Chlamydospores of Phytophthora palmivora in Soil. Phytopathology. 64, 1307-1309. doi: 10.1094/Phyto-64-1307
Kodama, F., Sonoda, T., Kawamura, T., Okada, T., Fujii, N., Nara, C., Igarashi, Y., Toda, T., Fuji, S., and Furuya, H. (2015). First Report of Blight Disease of Asparagus by Phytophthora sp. in Clade 6 in Japan. Plant Disease. 99, 1857. doi: org/10.1094/PDIS-02-15-0210-PDN
Komatsu, K., Katayama, Y., Omatsu, T., Mizutani, T., Fukuhara, T., Kodama, M., Arie, T., Tohru Teraoka, T., and Moriyama, H. (2016). Genome sequence of a novel mitovirus identified in the phytopathogenic fungus Alternaria arborescens. Arch Virol. 161, 2627-2631. doi: 10.1007/s00705-016- 2953-1
Kozlakidis, Z., Brown, N. A., Jamal, A., Phoon, X., and Coutts, R. H. A. (2010). Incidence of endornaviruses in Phytophthora taxon douglasfir and Phytophthora ramorum. Virus Genes. 40, 130–134. doi: 10.1007/s11262-009-0421-7
Larkin, M A., Blackshields, G., Brown, N P., et al. (2007). Clustal W and Clustal X version 2.0.Bioinformatics. 23, 2947–2948. doi: org/10.1093/bioinformatics/btm404
Lefebvre, A., Scalla, R., and Pfeiffer, P. (1990). The double-stranded RNA associated with the '447' cytoplasmic male sterility in Vicia faba is packaged together with its replicase in cytoplasmic membranous vesicles. Plant Mol Biol. 14, 477-490. doi: 10.1007/BF00027494
Le, S Q., and Gascuel, O. (2008). An improved general amino acid replacement matrix. Mol Biol Evol. 25, 1307-1320. doi: 10.1093/molbev/msn067
Marchler-Bauer, A., Yu Bo., Han, L., He, J., Lanczycki, C, J., Lu, S., Chitsaz, F., Myra K Derbyshire, M, K., Geer, R, C., Gonzales, N, R., Gwadz, M., et al. (2017). CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 2017 45(D1), D200- D203. doi: 10.1093/nar/gkw1129
Mackenzie, S. A., Pring, D. R., and Bassett, M. J. (1988). Large doublestranded RNA molecules in Phaseolus vulgaris L. are not associated with cytoplasmic male sterility. Theor Appl Genet. 76, 59–63. doi: 10.1007/BF00288832
Marzano, S. L., Nelson, B. D., Ajayi-Oyetunde, O., Bradley, C. A., Hughes, T. J., Hartman, G. L., Eastburn, D. M., and Domiera, L. L. (2016). Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens. J Virol. 90, 6846–6863. doi: 10.1128/JVI.00357-16
Moore, A.L., Shiba, T., Young, L., Harada, S., Kita, K. and Ito, K. (2013). Unraveling the heater: New insights into the structure of the alternative oxidase. Annu. Rev. Plant Biol. 64, 637-663.
Moriyama, H., Kanaya, K., Wang, JZ., Nitta, T., and Fukuhara, T. (1996). Stringently and developmentally regulated levels of a cytoplasmic double-stranded RNA and its high-efficiency transmission via egg and pollen in rice. Plant Mol Biol. 31, 713–719. doi: 10.1007/BF00019459
Moriyama, H., Horiuchi, H., Nitta, T., and Fukuhara, T. (1999a). Unusual inheritance of evolutionarily- related double-stranded RNAs in interspecific hybrid between rice plants Oryza sativa and Oryza rufipogon. Plant Mol Biol. 39, 1127–1136. doi: 10.1023/a: 1006118304093
Moriyama, H., Horiuchi, H., Koga, R., and Fukuhara, T. (1999b). Molecular Characterization of Two Endogenous Double-stranded RNAs in Rice and Their Inheritance by Interspecific Hybrids. J. Biol. Chem. 274 (11), 6882-6888. doi: 10.1074/jbc.274.11.6882
Moriyama, H., Nitta, T., and Fukuhara, T. (1995). Double-stranded RNA in rice: a novel RNA replicon in plants. Mol Gen Genet 248, 364-369. doi: 10.1007/BF02191603
Niu, Y., Yuan, Y., Mao, J., Yang, Z., Cao, Q., Zhang, T., Wang, S., and Liu, D. (2018). Characterization of two novel mycoviruses from Penicillium digitatum and the related fungicide resistance analysis. Sci. Rep. 8(1), 5513. doi: 10.1038/s41598-018-23807-3
Nuss, D. L. (2005). Hypovirulence: mycoviruses at the fungal-plant interface. Nat Rev Microbiol. 3, 632–642. doi: 10.1038/nrmicro1206
Okada, R., Alcalá-Briseño, I. R., Escalante, C., Sabanadzovic, S., Rodrigo A. Valverde, R. A. (2018). Genomic sequence of a novel endornavirus from Phaseolus vulgaris and occurrence in mixed infections with two other endornaviruses. Virus Research 257, 63- 67. doi: 10.1016/j.virusres.2018.09.005
Okada, R., Kiyota, E., Moriyama, H., Fukuhara, T., and Natsuaki, T. (2015). A simple and rapid method to purify viral dsRNA from plant and fungal tissue. J. Gen. Plant Pathol. 81, 103–107. doi: 10.1007/s10327-014-0575-6
Okada, R., Yong, C. K., Valverde, R. A., Sabanadzovic, S., Aoki, N., Hotate, S., Kiyota, E., Moriyama, H., and Fukuhara, T. (2013). Molecular characterization of two evolutionarily distinct endornaviruses co-infecting common bean (Phaseolus vulgaris). J Gen Virol 94, 220–229. doi: 10.1099/vir.0.044487-0
Ong, J. W. L., Li, H., Sivasithamparam, K., Dixon, K. W., Jones, M. G. K., and Wylie, S. J. (2016). Novel Endorna-like viruses, including three with two open reading frames, challenge the membership criteria and taxonomy of the Endornaviridae. Virology. 499, 203–211. doi: 10.1016/j.virol.2016.08.019
Osaki, H., Nakamura, H., Sasaki, A., Matsumoto, N., and Yoshida, K. (2006). An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Res. 118, 143–149. doi: 10.1016/j.virusres.2005.12.004
Pearson, M. N., Beever, R. E., Boine, B., and Arthur, K. (2009). Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol. 10, 115–128. doi: 10.1111/j.1364- 3703.2008.00503.x
Pfeiffer, P. (1998). Nucleotide sequence, genetic organization and expression strategy of the double-stranded RNA associated with the ‘447’cytoplasmic male sterility in Vicia faba. J Gen Virol. 79, 2349–2358 doi: org/10.1099/0022-1317-79-10-2349
Pfeiffer, P., Jung, J. L., Heitzler, J., and Keith, G. (1993). Unusual structure of the double-stranded RNA associated with the ‘447’cytoplasmic male sterility in Vicia faba. J Gen Virol. 74, 1167–1173. doi: 10.1099/0022-1317-74-6-1167
Saude, C., Hurtado-Gonzales, O. P., Lamour, K. H., and Hausbeck, M. K. (2008). Occurrence and characterization of a Phytophthora sp. pathogenic to asparagus (Asparagus officinalis) in Michigan. Phytopathology. 98, 1075–1083. doi: 10.1094/PHYTO-98-10-1075
Schumann, G.L. and C. J. D’Arcy. (2000). Late blight of potato and tomato. The Plant Health Instructor. doi: 10.1094/PHI-I-2000-0724-01
Stöver, B C., and Müller, K F. (2010). TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics. 5, 11, 7. doi: 10.1186/1471-2105-11-7
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30, 2725-2729. doi: 10.1093/molbev/mst197
Thompson, J. D., Gibson, T.J., F Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882. doi: 10.1093/nar/25.24.4876
Tokunaga, T., and Bartnicki-Garcia, S. (1971). Cyst wall formation and endogenous carbohy drate utilization during synchronous encystment of Phytophthora palmivora zoospores. Arch Mikrobiol. 79, 283-292. doi: 10.1007/BF00424905 Toyama Prefecture. Ann Phytopathol. Soc. Jpn. 64 (6), 629.
Tuomivirta, T.T., Kaitera, J., and Hantula, J. (2009). A novel putative virus of Gremmeniella abietina type B (Ascomycota: Helotiaceae) has a composite genome with endornavirus affinities. J Gen Virol. 90, 2299–2305. doi: 10.1099/vir.0.011973-0.
Turpen, T., Garger, S. J., and Grill, L. K. (1988). On the mechanism of cytoplasmic male sterility in the 447 line of Vicia faba. Plant Mol Biol. 10, 489–497. doi: 10.1007/BF00033604
Valverde, R. A., Khalifa, M. E., Okada, R., Fukuhara, T., and Sabanadzovic, S. (2019). ICTV Virus Taxonomy Profile: Endornaviridae. J Gen Virol. 100, 1204–1205 doi: 10.1099 /jgv.0.001277
Valverde, R. A., and Gutierrez, D. L. (2007). Transmission of a dsRNA in bell pepper and evidence that it consists of the genome of an endornavirus. Virus Genes. 35, 399–403. doi: 10.1007/s11262-007-0092-1
Wakarchuk, D. A., and Hamilton, R. I. (1985). Cellular double-stranded RNA in Phaseolus vulgaris. Plant Mol Biol. 5, 55–63. doi: 10.1007/BF00017873
Wakarchuk, D. A., and Hamilton, R. I. (1990). Partial nucleotide sequence from enigmatic dsRNAs in Phaseolus vulgaris. Plant Mol Biol. 14, 637–639. doi: 10.1007/BF00027512
Webster, J. and Weber, R. W. S. (2007). Introduction to Fungi. Cambridge University Press, Cambridge, UK. 841 pp
Xie, J., and Jiang, D. (2014). New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol. 52, 45–68. doi: 10.1146/annurev-phyto-102313-050222
Yang, D., Wu, M., Zhang, J., Chen, W., Li, G., and Yang, L. (2018). Sclerotinia minor Endornavirus 1, a Novel Pathogenicity Debilitation-Associated Mycovirus with a Wide Spectrum of Horizontal Transmissibility. Viruses. 27, 589. doi: 10.3390/v10110589
Yu, X., Li, B., Fu, Y., Xie, J., Cheng, J., Ghabrial, S.A., Li, G., Yi, X., Jiang, D., 2013. Extracellular transmission of a DNA mycovirus and its use as a natural fungicide. Proc. Natl. Acad. Sci. U.S.A. 110, 1452–1457.
植松清次.(2015). 疫病菌類同定のための簡易な分離・培養・形態形成法 Ver. 3. 植物防疫 特別増刊号 (№ 17) : 13-22.
内田景子, 高橋優実, 岡田 亮, 福原敏行, 有江 力, 寺岡 徹, 植松清次, 森山裕充. (2018). 疫病菌エンドルナウイルスが遊走子嚢形成及び被嚢胞子化の発芽率に及ぼす影響. 日植病報 84 (3) :236.
児玉不二雄, 植松清次, Mohammad Ziaur Rahman, 守川俊幸, 古屋廣光, 園田高広, 堀越紀夫, 平子喜一, 小木曽秀紀, 鐘ヶ江良彦, 景山幸二.(2016). 日本産アスパラガス疫病菌と米国産アスパラガス疫病菌 Phytophthora asparagi との比較.日植病報 82 (3) : 235-236.
児玉不二雄, 古屋廣光, 岡田 貴, 園田高広,河村倫希, 藤井直哉, 戸田 武, 藤 晋一.(2014).Phytophthora asparagi. によるアスパラガス疫病の発生.日植病報 80 (4) : 240-241.
古屋廣光, 藤井直哉, 福島秀樹, 奈良知春, 戸田 武, 篠田光江, 佐山 玲, 藤 晋一, 齋藤隆明.(2015). 秋田県でみられるアスパラガス生育不良の原因究明.秋田県立大学ウェブジャーナルB (研究成果部門)2:176-180.
宮田善雄, 大杉 武, 正子 朔.(1980). Phytophthora capsici 遊走子嚢の遊走子分割過程における β-シトステロールの動向. The scientific reports of Kyoto Prefectural University. 32: 39-50.
山崎陽子, 守川俊幸. (1998). 富山県で発生したアスパラガス疫病 (新称). Ann. Phytopathol. Soc.Jpn. 64 (6) : 629.
横田仁子, 大森誉紀, 奈尾雅浩, 渡部貴志, 北本宏子. (2013). 愛媛県内のアスパラガス改植後の障害発生における疫病の関与. 土と微生物 (Soil Microorganisms) 67 (2) : 77-82.
渡邊幸子, 古田明子, 稲田 稔. (2015). 佐賀県におけるアスパラガス疫病の発生. 植物防疫 69: 663-669.
長崎県病害虫防除所. 2017. 平成29年度病害虫発生予察特殊報 第2号.
長野県病害虫防除所. 2017. 平成29年度病害虫発生予察特殊報 第2号.