Allahverdiyeva Y, Mustila H, Ermakova M, Bersanini L, Richaud P, Ajlani G, Battchikova N, Cournac L, Aro E-M (2013) Flavodiiron proteins Flv1 and Flv3 enable cyanobacterial growth and photosynthesis under fluctuating light. Proc. Natl. Acad. Sci. USA 110: 4111–4116.
Allahverdiyeva Y, Isojärvi J, Zhang P, Aro E-M (2015) Cyanobacterial oxygenic photosynthesis is protected by flavodiiron proteins. Life (Basel) 5: 716–743.
Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC (2014) Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat. Commun. 5: 5439.
Asada K (1999) The water-water cycle in chloroplasts: scavenging of active oxygens and dissipation of excess photons. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 601–639.
Asada K (2000) The water-water cycle as alternative photon and electron sinks. Philo. Trans. R. Soc. Lond. B. Biol Sci. 355: 1419–1431.
Badger MR, von Caemmerer S, Ruuska S, Nakano H (2000) Electron flow to oxygen in higher plants and algae: rates and control of direct photoreduction (Mehler reaction) and rubisco oxygenase. Philos. Trans. R. Soc. Lond. B 355: 1433–1446.
Bailleul B, Cardol P, Breyton C, Finazzi G (2010) Electrochromism: a useful probe to study algal photosynthesis. Photosynth. Res. 106: 179–189.
Basso L, Yamori W, Szabo I, Shikanai T (2020) Collaboration between NDH and KEA3 allows maximally efficient photosynthesis after a long dark adaptation. Plant Physiol. 184: 2078–2090.
Bednarczyk P, Wieckowski MR, Broszkiewicz M, Skowronek K, Siemen D, Szewczyk A. (2013) Putative structural and functional coupling of the mitochondrial BK channel to the respiratory chain. PloS one 8: e68125.
Bloom AJ, Lancaster KM (2018) Manganese binding to Rubisco could drive a photorespiratory pathway that increases the energy efficiency of photosynthesis. Nat. Plants 4: 414–422.
Buchanan BB (2016) The path to thioredoxin and redox regulation in chloroplasts. Annu. Rev. Plant Biol. 67: 1–24.
Cruz JA, Sacksteder CA, Kanazawa A, Kramer DM (2001) Contribution of electric field (∆ψ) to steady-state trans thylakoid proton motive force (pmf) in vitro and in vivo. Control of pmf parsing into ∆ψ and ∆pH by ionic strength. Biochemistry 40: 1226–1237.
DalCorso G, Pesaresi P, Masiero S, Aseeva E, Schünemann D, Finazzi G, Joliot P, Barbato R, Leister D (2008) A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis. Cell 132: 273–285.
Elbehti A, Brasseur G, Lemesle-Meunier D (2000) First evidence for existence of an uphill electron transfer through the bc1 and NADH-Q oxidoreductase complexes of the acidophilic obligate chemolithotrophic ferrous ion-oxidizing bacterium Thiobacillus ferrooxidans. J. Bacteriol. 182: 3602–3606.
Ferro M, Brugiere S, Salvi D, Seigneurin D, Magali B Court, Moyet L, Ramus C Miras S Mellal M, Le Gall S, Kieffer-Jaquinod S, Bruley C, Garin J, Joyard J, Masselon C, and Rolland N (2010) AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Mol. Cell Proteomics 9: 1063–1084.
Hashimoto M, Endo T, Peltier G, Tasaka M, Shikanai T (2003) A nucleus- encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis. Plant J. 36: 541–549.
Havaux M, Niyogi KK (1999) The violaxanthin cycle protects plants from photooxidative damage by more than one mechanism. Proc. Natl. Acad. Sci. USA. 96: 8762–8767.
Helman Y. Tchernov D, Reinhold L, Shibata M, Ogawa T, Schwarz R, Ohad I and Kaplan A (2003) Genes encoding A-type flavoproteins are essential for photoreduction of O2 in cyanobacteria. Curr. Biol. 13: 230–235.
Herter SM, Kortlüke CM, Drews G (1998) Complex I of Rhodobacter capsulatus and its role in reverted electron transport. Arch. Microbiol. 169: 98–105.
Ifuku K, Endo T, Shikanai T, Aro E-M (2011) Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits. Plant Cell Physiol. 52: 1560–1568.
Kramer DM, Cruz JA, Kanazawa A (2003) Balancing the central roles of the thylakoid proton gradient. Trends Plant Sci. 8: 27–32.
Kramer DM, Johnson G, Kiirats O, Edwards GE (2004) New fluorescence parameters for the determination of QA redox state and excitation energy fluxes. Photosynth. Res. 79: 209–218.
Kromdijk J, Głowacka K, Leonelli L, Gabilly ST, Iwai M, Krishna K. Niyogi, Long S (2016) Improving photosynthesis and crop productivity by accelerating recovery from photoprotection. Science 354: 857-861.
Klughammer C, Schreiber U (1994) An improved method, using saturating light pulses, for the determination of photosystem I quantum yield via P700+- absorbance changes at 830 nm. Planta 192: 261–268.
Klughammer C, Siebke K, Schreiber U (2013) Continuous ECS-indicated recording of the proton-motive charge flux in leaves. Photosynth. Res. 117: 471–487.
Kohzuma K, Dal Bosco C, Meurer J, Kramer DM (2013) Light- and metabolism-related regulation of the chloroplast ATP synthase has distinct mechanisms and functions. J. Biol. Chem. 288: 13156–13163.
Kunz H-H, Gierth M, Herdean A, Satoh-Cruz M, Kramer DM, Spetea C, Schroeder JI (2014) Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis. Proc. Natl. Acad. Sci. USA 111: 7480–7485.
Li Z, Wakao S, Fischer BB, Niyogi KK (2009) Sensing and responding to excess light. Annu. Rev. Plant Biol. 60: 239–260.
Motohashi K, Kondoh A, Stumpp MT, Hisabori T (2001) Comprehensive survey of proteins targeted by chloroplast thioredoxin. Proc. Natl. Acad. Sci. USA 98: 11224–11229.
Müller P, Li XP, Niyogi KK (2001) Non-photochemical quenching. A response to excess light energy. Plant Physiol. 125: 1558–1566.
Munekage Y, Hojo M, Meurer J, Endo T, Tasaka M, Shikanai T (2002) PGR5 is involved in cyclic electron flow around photosystem I and is essential for photoprotection in Arabidopsis. Cell 110: 361–371.
Munekage Y, Hashimoto M, Miyake C, Tomizawa K, Endo T, Tasaka M, Shikanai T (2004) Cyclic electron flow around photosystem I is essential for photosynthesis. Nature 429: 579–582.
Nakano H, Yamamoto H, Shikanai T (2019) Contribution of NDH- dependent cyclic electron transport around photosystem I to the generation of proton motive force in the weak mutant allele of pgr5. Biochim. Biophys. Acta Bioenergetics 1860: 369–374.
Nikkanen L, Toivola J, Trotta A, Diaz MG, Tikkanen M, Aro E-M, Rintamäki E (2018) Regulation of cyclic electron flow by chloroplast NADPH‐dependent thioredoxin system. Plant Direct 2: e00093.
Nikkanen L, Sanchez AS, Ermakova M, Rögner M, Cournac L, Allahverdiyeva Y (2020) Functional redundancy between flavodiiron proteins and NDH-1 in Synechocystis sp. PCC 6803. Plant J. doi: 10.1111/tpj.14812.
Okegawa Y, Long TA, Iwano M, Takayama S, Kobayashi Y, Covert SF, Shikanai T (2007) A balanced PGR5 level is required for chloroplast development and optimum operation of cyclic electron transport around photosystem I Plant Cell Physiol. 48: 1462–1471.
Peltier G, Aro E-M, Shikanai T (2016) NDH-1 and NDH-2 plastoquinone reductases in oxygenic photosynthesis. Annu. Rev. Plant Biol. 67: 55–80.
Roosild TP, Miller S, Booth IR, Choe S (2002) A mechanism of regulating transmembrane potassium flux through a ligand-mediated conformational switch. Cell 109: 781–791.
Ruban AV (2016) Nonphotochemical chlorophyll fluorescence quenching: Mechanism and effectiveness in protecting plants from photodamage. Plant Physiol. 170: 1903–1916.
Schlosser A, Hamann A, Bossemeyer D, Schneider E, Bakker EP (1993) NAD+ binding to the Escherichia coli K+-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport. Mol. Microbiol. 9: 533–543.
Shikanai T (2007) Cyclic electron transport around photosystem I: genetic approaches. Annu. Rev. Plant Biol. 58: 199–217.
Shikanai T (2014) Central role of cyclic electron transport around photosystem I in the regulation of photosynthesis. Curr. Opin. Biotech. 26: 25–30.
Shirao M, Kuroki S, Kaneko K, Kinjo Y, Tsuyama M, Förster B, Takahashi S, Badger M (2013) Gymnosperms have increased capacity for electron leakage to oxygen (Mehler and PTOX reactions) in photosynthesis compared with angiosperms. Plant Cell Physiol. 54: 1152–1163.
Soga N, Kimura K, Kinosita K Jr, Yoshida M, Suzuki T (2017) Perfect chemomechanical coupling of FoF1-ATP synthase. Proc. Natl. Acad. Sci. USA 114: 4960–4965.
Spetea C, Herdean A, Allorent G, Carraretto L, Finazzi, Szabo I (2017) An update on the regulation of photosynthesis by thylakoid ion channels and transporters in Arabidopsis. Physiol. Plant 161: 16–27.
Stiehl HH, Witt HT (1969) Quantitative treatment of the function of plastoquinone in photosynthesis. Z. Naturforsch B 24: 1588–1598.
Strand DD, Fisher N, Kramer DM (2017) The higher plant plastid NAD(P)H dehydrogenase-like complex (NDH) is a high efficiency proton pump that increases ATP production by cyclic electron flow. J. Biol. Chem. 292: 11850– 11860.
Suorsa M, Järvi S, Grieco M, Nurmi M, Pietrzykowska M, Rantala M, Kangasjärvi S, Paakkarinen V, Tikkanen M, Jansson S, Aro E-M (2012) PROTON GRADIENT REGULATION5 is essential for proper acclimation of Arabidopsis photosystem I to naturally and artificially fluctuating light conditions. Plant Cell 24: 2934–2948.
Szabò I, Spetea C. (2017) Impact of the ion transportome of chloroplasts on the optimization of photosynthesis. J. Exp. Bot. 68: 3115–3128.
Takabayashi A, Ishikawa N, Obayashi T, Ishida S, Obokata J, Endo T, Sato F (2009) Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches. Plant J. 57: 207–219.
Takizawa K, Kanazawa A, Kramer DM (2008) Depletion of stromal Pi induces high “energy-dependent” antenna exciton quenching (qE) by decreasing proton conductivity at CFO-CF1 ATP synthase. Plant Cell Environ. 31: 235–243.
Tikkanen M, Grieco M, Kangasjärvi S, Aro E-M (2010) Thylakoid protein phosphorylation in higher plant chloroplasts optimizes electron transfer under fluctuating light. Plant Physiol. 152: 723–735.
Tsujii M, Kera K, Hamamoto S, Kuromori T, Shikanai T, Uozumi N (2019) Evidence for potassium transport activity of Arabidopsis KEA1-KEA6. Sci. Rep. 11: 10040.
Ueda M, Kuniyoshi T, Yamamoto H, Sugimoto K, Ishizaki K, Kohchi T, Nishimura Y, Shikanai T (2012) Composition and physiological function of the chloroplast NADH dehydrogenaselike complex in Marchantia polymorpha. Plant J. 72: 683–693.
Wang C, Shikanai T (2019) Modification of activity of the thylakoid H+/K+ antiporter KEA3 disturbs ∆pH-dependent regulation of photosynthesis. Plant Physiol. 181: 762–773.
Wang C, Yamamoto H, Shikanai T (2015) Role of cyclic electron transport around photosystem I in regulating proton motive force. Biochim. Biophys. Acta 1847: 931–938.
Wang C, Yamamoto H, Narumiya F, Munekage YN, Finazzi G, Szabo I, Shikanai T (2017) Fine-tuned regulation of the K+/H+ antiporter KEA3 is required to optimize photosynthesis during induction. Plant J. 89: 540–553.
Wojtovich AP, Smith CO, Haynes CM, Nehrke KW, Brookes PS (2013) Physiological consequences of complex II inhibition for aging, disease, and the mKATP channel. Biochim. Biophys. Acta 1827: 598–611.
Yamamoto H, Shikanai T (2019) PGR5-dependent cyclic electron flow protects photosystem I under fluctuating light at donor and acceptor sides. Plant Physiol. 179: 588–600.
Yamamoto H, Takahashi S, Badger MR, Shikanai T (2016) Artificial remodeling of alternative electron flow by flavodiiron proteins in Arabidopsis. Nat. Plants 2: 16012.
Yamori W, Shikanai T (2016) Physiological functions of cyclic electron transport around photosystem I in sustaining photosynthesis and plant growth. Annu. Rev. Plant Biol. 67: 81–106.
Yamori W, Shikanai T, Makino A (2015) Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light. Sci. Rep. 5: 13908.
Yamori W, Makino A, Shikanai T (2016) A physiological role of cyclic electron transport around photosystem I in sustaining photosynthesis under fluctuating light in rice. Sci. Rep. 6: 20147.