Altenburg, A. F., Kreijtz, J., de Vries, R., Song, F., Fux, R., Rimmelzwaan, G., et al. (2014). Modified vaccinia virus Ankara (MVA) as production platform for vaccines against influenza and other viral respiratory diseases. Viruses 6, 2735–2761. doi: 10.3390/v6072735
Chiuppesi, F., Salazar, M. A., Contreras, H., Nguyen, V. H., Martinez, J., Park, Y., et al. (2020). Development of a multi-antigenic SARS-CoV-2 vaccine candidate using a synthetic poxvirus platform. Nat. Commun. 11:6121. doi: 10.1038/s41467- 020-19819-1
Cines, D. B., and Bussel, J. B. (2021). SARS-CoV-2 vaccine-induced immune thrombotic thrombocytopenia. N. Engl. J. Med. 384, 2254–2256. doi: 10.1056/ NEJMe2106315
Coronaviridae Study Group of the International Committee on Taxonomy of Viruses (2020). The species severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Nat. Microbiol. 5, 536–544. doi: 10.1038/s41564-020-0695-z
Dai, L., and Gao, G. F. (2021). Viral targets for vaccines against COVID-19. Nat. Rev. Immunol. 21, 73–82. doi: 10.1038/s41577-020-00480-0
Folegatti, P. M., Ewer, K. J., Aley, P. K., Angus, B., Becker, S., Belij-Rammerstorfer, S., et al. (2020). Safety and immunogenicity of the ChAdOx1 nCoV-19 vaccine against SARS-CoV-2: a preliminary report of a phase 1/2, single- blind, randomised controlled trial. Lancet 396, 467–478. doi: 10.1016/ S0140-6736(20)31604-4
García-Arriaza, J., Garaigorta, U., Pérez, P., Lázaro-Frías, A., Zamora, C., Gastaminza, P., et al. (2021). COVID-19 vaccine candidates based on modified vaccinia virus Ankara expressing the SARS-CoV-2 spike induce robust T-and B-cell immune responses and full efficacy in mice. J. Virol. 95, e02260–e02320. doi: 10.1128/JVI.02260-20
Goedhart, J., and Luijsterburg, M. S. (2020). Volca NoseR is a web app for creating, exploring, labeling and sharing volcano plots. Sci. Rep. 10:20560. doi: 10.1038/ s41598-020-76603-3
Grifoni, A., Weiskopf, D., Ramirez, S. I., Mateus, J., Dan, J. M., Moderbacher, C. R., et al. (2020). Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals. Cells 181, 1489–1501.e15. doi: 10.1016/j.cell.2020.05.015
Hoffmann, M., Kleine-Weber, H., Schroeder, S., Krüger, N., Herrler, T., Erichsen, S., et al. (2020). SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor. Cells 181, 271–280.e8. doi: 10.1016/j.cell.2020.02.052
Ishigaki, H., Nakayama, M., Kitagawa, Y., Nguyen, C. T., Hayashi, K., Shiohara, M., et al. (2021). Neutralizing antibody-dependent and-independent immune responses against SARS-CoV-2 in cynomolgus macaques. Virology 554, 97–105. doi: 10.1016/j. virol.2020.12.013
Ishii, K., Hasegawa, H., Nagata, N., Mizutani, T., Morikawa, S., Tashiro, M., et al. (2006). Highly attenuated vaccinia virus DIs as a potential SARS vaccine. Adv. Exp. Med. Biol. 581, 593–596. doi: 10.1007/978-0-387-33012-9_107
Ishii, K., Ueda, Y., Matsuo, K., Matsuura, Y., Kitamura, T., Kato, K., et al. (2002). Structural analysis of vaccinia virus DIs strain: application as a new replication- deficient viral vector. Virology 302, 433–444. doi: 10.1006/viro.2002.1622
Jackson, L. A., Anderson, E. J., Rouphael, N. G., Roberts, P. C., Makhene, M., Coler, R. N., et al. (2020). An mRNA vaccine against SARS-CoV-2-preliminary report. N. Engl. J. Med. 383, 1920–1931. doi: 10.1056/NEJMoa2022483
Jara, A., Undurraga, E. A., González, C., Paredes, F., Fontecilla, T., Jara, G., et al. (2021). Effectiveness of an inactivated SARS-CoV-2 vaccine in Chile. N. Engl. J. Med. 385, 875–884. doi: 10.1056/NEJMoa2107715
Ju, B., Zhang, Q., Ge, J., Wang, R., Sun, J., Ge, X., et al. (2020). Human neutralizing antibodies elicited by SARS-CoV-2 infection. Nature 584, 115–119. doi: 10.1038/ s41586-020-2380-z
Kato, H., Miyakawa, K., Ohtake, N., Yamaoka, Y., Yajima, S., Yamazaki, E., et al. (2022). Vaccine-induced humoral response against SARS-CoV-2 dramatically declined but cellular immunity possibly remained at 6 months post BNT162b2 vaccination. Vaccine 40, 2652–2655. doi: 10.1016/j.vaccine.2022.03.057
Kitabatake, M., Inoue, S., Yasui, F., Yokochi, S., Arai, M., Morita, K., et al. (2007). SARS-CoV spike protein-expressing recombinant vaccinia virus efficiently induces neutralizing antibodies in rabbits pre-immunized with vaccinia virus. Vaccine 25, 630–637. doi: 10.1016/j.vaccine.2006.08.039
Kollias, A., Kyriakoulis, K. G., Dimakakos, E., Poulakou, G., Stergiou, G. S., and Syrigos, K. (2020). Thromboembolic risk and anticoagulant therapy in COVID-19 patients: emerging evidence and call for action. Br. J. Haematol. 189, 846–847. doi: 10.1111/bjh.16727
Levin, E. G., Lustig, Y., Cohen, C., Fluss, R., Indenbaum, V., Amit, S., et al. (2021). Waning immune Humoral response to BNT162b2 Covid-19 vaccine over 6 months. N. Engl. J. Med. 385:e84. doi: 10.1056/NEJMoa2114583
Liu, R., Americo, J. L., Cotter, C. A., Earl, P. L., Erez, N., Peng, C., et al. (2021). One or two injections of MVA-vectored vaccine shields hACE2 transgenic mice from SARS-CoV-2 upper and lower respiratory tract infection. Proc. Natl. Acad. Sci. U. S. A. 118:e2026785118. doi: 10.1073/pnas.2026785118
Logunov, D. Y., Dolzhikova, I. V., Zubkova, O. V., Tukhvatulin, A. I., Shcheblyakov, D. V., Dzharullaeva, A. S., et al. (2020). Safety and immunogenicity of an rAd26 and rAd5 vector-based heterologous prime-boost COVID-19 vaccine in two formulations: two open, non-randomised phase 1/2 studies from Russia. Lancet 396, 887–897. doi: 10.1016/S0140-6736(20)31866-3
Matsumoto, Y., Yasui, F., Endo, A., Sanada, T., Munakata, T., Takagi, A., et al. (2022). Early circulating strain of SARS-CoV-2 causes severe pneumonia distict from that caused by variants of concern. Research Square [Preprint]. doi: 10.21203/rs.3.rs-1267705/v1
Matsuyama, S., Nao, N., Shirato, K., Kawase, M., Saito, S., Takayama, I., et al. (2020). Enhanced isolation of SARS-CoV-2 by TMPRSS2-expressing cells. Proc. Natl. Acad. Sci. U. S. A. 117, 7001–7003. doi: 10.1073/pnas.2002589117
Mercado, N. B., Zahn, R., Wegmann, F., Loos, C., Chandrashekar, A., Yu, J., et al. (2020). Single-shot Ad26 vaccine protects against SARS-CoV-2 in rhesus macaques. Nature 586, 583–588. doi: 10.1038/s41586-020-2607-z
Mortensen, R. M., and Kingston, R. E. (2009). Selection of transfected mammalian cells. Curr. Protoc. Mol. Biol. 9:86. doi: 10.1002/0471142727.mb0905s86
Nie, X., Qian, L., Sun, R., Huang, B., Dong, X., Xiao, Q., et al. (2021). Multi-organ proteomic landscape of COVID-19 autopsies. Cells 184, 775–791.e14. doi: 10.1016/j. cell.2021.01.004
Ogiwara, H., Yasui, F., Munekata, K., Takagi-Kamiya, A., Munakata, T., Nomura, N., et al. (2014). Histopathological evaluation of the diversity of cells susceptible to H5N1 virulent avian influenza virus. Am. J. Pathol. 184, 171–183. doi: 10.1016/j.ajpath.2013.10.004
Pan, Y., Liu, L., Tian, T., Zhao, J., Park, C. O., Lo@us, S. Y., et al. (2021). Epicutaneous immunization with modified vaccinia Ankara viral vectors generates superior T cell immunity against a respiratory viral challenge. NPJ Vaccines 6:1. doi: 10.1038/s41541-020-00265-5
Peng, Y., Mentzer, A. J., Liu, G., Yao, X., Yin, Z., Dong, D., et al. (2020). Broad and strong memory CD4(+) and CD8(+) T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19. Nat. Immunol. 21, 1336–1345. doi: 10.1038/s41590-020-0782-6
Polack, F. P., Thomas, S. J., Kitchin, N., Absalon, J., Gurtman, A., Lockhart, S., et al. (2020). Safety and efficacy of the BNT162b2 mRNA Covid-19 vaccine. N. Engl. J. Med. 383, 2603–2615. doi: 10.1056/NEJMoa2034577
Routhu, N. K., Cheedarla, N., Gangadhara, S., Bollimpelli, V. S., Boddapati, A. K., Shiferaw, A., et al. (2021). A modified vaccinia Ankara vector-based vaccine protects macaques from SARS-CoV-2 infection, immune pathology, and dysfunction in the lungs. Immunity 54, 542–556.e9. doi: 10.1016/j.immuni.2021.02.001
Sadoff, J., Gray, G., Vandebosch, A., Cárdenas, V., Shukarev, G., Grinsztejn, B., et al. (2021). Safety and efficacy of single-dose Ad26.COV2.S vaccine against Covid-19. N. Engl. J. Med. 384, 2187–2201. doi: 10.1056/NEJMoa2101544
Silva-Cayetano, A., Foster, W. S., Innocentin, S., Belij-Rammerstorfer, S., Spencer, A. J., Burton, O. T., et al. (2021). A booster dose enhances immunogenicity of the COVID-19 vaccine candidate ChAdOx1 nCoV-19 in aged mice. Medicine 2, 243–262.e8. doi: 10.1016/j.medj.2020.12.006
Tagaya, I., Kitamura, T., and Sano, Y. (1961). A new mutant of dermovaccinia virus. Nature 192, 381–382. doi: 10.1038/192381a0
Tanriover, M. D., Doğanay, H. L., Akova, M., Güner, H. R., Azap, A., Akhan, S., et al. (2021). Efficacy and safety of an inactivated whole-virion SARS-CoV-2 vaccine (CoronaVac): interim results of a double-blind, randomised, placebo-controlled, phase 3 trial in Turkey. Lancet 398, 213–222. doi: 10.1016/S0140-6736(21)01429-X
Tscherne, A., Schwarz, J. H., Rohde, C., Kupke, A., Kalodimou, G., Limpinsel, L., et al. (2021). Immunogenicity and efficacy of the COVID-19 candidate vector vaccine MVA-SARS-2-S in preclinical vaccination. Proc. Natl. Acad. Sci. U. S. A. 118:e2026207118. doi: 10.1073/pnas.2026207118
Wrapp, D., Wang, N., Corbett, K. S., Goldsmith, J. A., Hsieh, C. L., Abiona, O., et al. (2020). Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation. Science 367, 1260–1263. doi: 10.1126/science.abb2507
Yasui, F., Itoh, Y., Ikejiri, A., Kitabatake, M., Sakaguchi, N., Munekata, K., et al. (2016). Sensitization with vaccinia virus encoding H5N1 hemagglutinin restores immune potential against H5N1 influenza virus. Sci. Rep. 6:37915. doi: 10.1038/ srep37915
Zhou, P., Yang, X. L., Wang, X. G., Hu, B., Zhang, L., Zhang, W., et al. (2020). A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 579, 270–273. doi: 10.1038/s41586-020-2012-7
Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A. H., Tanaseichuk, O., et al. (2019). Metascape provides a biologist-oriented resource for the analysis of systems-level datasets. Nat. Commun. 10:1523. doi: 10.1038/s41467-019-09234-6