Anderson, S., Bankier, A, T., Barrell, B, G., de-Bruijn, M, H., Coulson, A, R., Drouin, J.,
Eperon, I C., Nierlich, D, P., Roe, B, A., Sanger, F., Schreier, P, H., Smith, A, J., Staden,
R., & Young, I, G. Sequence and organization of the human mitochondrial genome.
Nature. 1981;290:457–465. (1981)
Ankel-Simons, F. & Cummins, J.M. Misconceptions about mitochondria and mammalian
fertilization: Implications for theories on human evolution. Proc. Natl. Acad. Sci.
USA,93,13859―13863. (1996)
Bartlam, M & Yamamoto, T. The structural basis for deadenylation by the
CCR4-NOT complex. Protein Cell 1(5): 443–452. (2010)
Birky, C. W. Jr. Uniparental inheritance of mitochondrial and chloroplast genes:
mechanisms and evolution. Proc Natl Acad Sci USA. 92(25):11331–11338. (1995)
Beech, P, L., Nheu, T., Schultz, T., Herbert, S., Lithgow, T., Gilson, P, R., & McFadden,
G, I. Mitochondrial FtsZ in a chromophyte alga. Science. 18; 287(5456):1276-9. (2000)
Bujnicki, M, J. & Rychlewski, L. Identification of a PD-(D/E) XK-like domain with a
novel configuration of the endonuclease active site in the methyl-directed restriction
enzyme Mrr and its homologs. Gene 267:183-191. (2001)
Burkovics, P., Szukacsov, V., Unk, I. & Haracska, L. Human Ape2 protein has a 3′‐5′
exonuclease activity that acts preferentially on mismatched base pairs. Nucleic Acids Res
34, 2508–2515. (2006)
Chen, Y, C., Li, C, L., Hsiao, Y, Y., Duh, Y., & Yuan, H, S. Structure and function of TatD
exonuclease in DNA repair. Nuc acid Res 42(16):10776-10785. (2014)
Coté, J. & Ruiz‐Carillo, A. Primers for mitochondrial DNA replication generated by
81
endonuclease G. Science 261, 765–769. (1993)
Cree, L, M., Samuels, D, C., de Sousa Lopes, S, C., Rajasimha, H, K., Wonnapinij, P.,
Mann, J, R., Dahl, H, H. & Chinnery, P, F. A reduction of mitochondrial DNA molecules
during embryogenesis explains the rapid segregation of genotypes. Nat. Genet. 40: 249254. (2008)
David, K, K., Sasaki, M., Yu, S-W., Dawson, T, M., and Dawson, V, L. EndoG is
dispensable in embryogenesis and apoptosis. Cell Death and Differentiation volume 13,
pages 1147–1155. (2006)
Dawid, I. B., & Blackler, A. W. Maternal andcytoplasmic inheritance of mitochondrial
DNA in Xenopus. Dev Biol 29: 152–162. (1972)
Dee, J. Multiple alleles and other factors affecting plasmodium formation in the true slime
mould Physarum polycephalum. Schw J Protozool. 13: 610-616. (1966)
Domenico, S., Nataliya, K., Vladimir, N. C., Konstantin, G. K., & Mikhail, F. A. Methods
for Efficient Elimination of Mitochondrial DNA from Cultured Cells. PLoS One.
11(5):e0154684. (2016)
Elizabeth S. G., Lawrence, I, G., & Julius M. Petite Mutation in Yeast. J Bacteriol.;
107(1): 377–381. (1971)
El Meziane, A., Callen, J, C. & Mounolou, J, C. Mitochondrial gene expression during
Xenopus laevis development: a molecular study. EMBO J 8:1649–1655. (1989)
Francesco, B., Robert, N. L., & Zofia, M. C. Human mitochondrial nucleases. FEBS J.
284(12): 1767-1777. (2017)
Frédéric, L., Florence, M., Paule, F., Anne, L., & Manuel, R. Organization and dynamics
82
of human mitochondrial DNA. J Cell Sci. 117(Pt 13):2653-62. (2004)
Gannavaram, S. & Debrabant, A. Involvement of TatD nuclease during programmed cell
death in the protozoan parasite Trypanosoma brucei. Mol Microbiol.83(5):926-35. (2012)
Giles, R. E., Blanc, H., Cann, H. M., & Wallace, D. C. Maternal inheritance of human
mitochondrial DNA. ProcNatl Acad Sci USA 77: 6715–6719. (1980)
Gilson, P, R. & Beech, P, L. Cell division protein FtsZ: running rings around bacteria,
chloroplasts and mitochondria. Res Microbiol. 152(1):3-10. (2001)
Gloor, J, W., Balakrishnan, L., Campbell, J, L. & Bambara, R, A. Biochemical analyses
indicate that binding and cleavage specificities define the ordered processing of human
Okazaki fragments by Dna2 and FEN1. Nucleic Acids Res 40, 6774–6786. (2012)
Hayashi, J., Yonekawa, H., Gotoh, O., Motohashi, J., & Tagashira, Y. Two different
molecular types of rat mitochondrial DNAs. Biochem Biophys Res Commun 81:871–877.
(1978)
Hutchison, C. A. III, Newbold, J. E., Potter, S. S., & Edgell, M. H. Maternal inheritance
of mammalian mitochondrial DNA. Nature 251: 536–538. (1974)
Jana, K., Lauber, C., Gimadutdinow, O., Urbanska, A., Cymerman, I., Ghosh, M.,
Szczesny, B. & Meiss, G. Production and characterization of recombinant protein
preparations of Endonuclease G-homologs from yeast, C. elegans and humans. Protein
Expr Purif. 73(1):99-106. (2010)
Jansen R, P, S. & De Boer, K. The bottleneck: mitochondrial imperatives in oogenesis
and ovarian follicular fate. MolCell Endocrinol. 145:81 – 8. (1998)
Kalifa, L., Beutner, G., Phadnis, N., Sheu, S. & Sia, A, E. Evidence for a Role of FEN1
83
in Maintaining Mitochondrial DNA Integrity. DNA Repair 8(mst). 8: 1242–1249. (2009)
Kawano, S., Anderson, R. W., Nanba, T., & Kuroiwa, T. Polymorphism and uniparental
inheritance of mitochondrial DNA in Physarum polycephalum. J Gen Microbiol 133:
3175–3182. (1987a)
Kawano, S., Kuroiwa, T., & Anderson, R. W. A third multiallelic mating-type locus in
Physarum polycephalum. J Gen Microbiol 133:2539-2546. (1987b)
Kawano, S., & Kuroiwa, T. Transmission pattern of mitochondrial DNA during
plasmodium formation in Physarum polycephalum. J Gen Microbiol 135: 1559–1566.
(1989)
Kawano, S., Takano, H., Imai, J., Mori, K. & Kuroiwa, T. A genetic system controlling
mitochondrial fusion in the slime mould, Physarum polycephalum. Genetics. 133(2):
213–224. (1993)
Kirouac-Brumet, J., Mansson, S., & Pallota, D. Multiple allelism at the matB locus in
Physarum polycephalum. Can J Genet Cytol 23: 9–16. (1981)
Kornblum, C., Nicholls, T, J., Haack, T, B., Scholer, S., Peeva, V., Danhauser, K.,
Hallmann, K., Zsurka, G., Rorbach, J., Iuso, A., Wieland, T., Sciacco, M., Ronchi, D.,
Comi, P, G., Mootha, K, V., Klopstock, T., Strom, M, T., Meitinger, T., Minczuk, M.,
Kunz, S, W., & Prokisch, H. Loss‐of‐function mutations in MGME1 impair mtDNA
replication and cause multisystemic mitochondrial disease. Nat Genet 45, 214–219.
(2013)
Kroon, A. M., de Vos W, M., & Bakker, H. The heterogeneity of rat-liver mitochondrial
DNA. BiochimBiophys Acta 519: 269–273. (1978)
Kuroiwa, T. Studies on mitochondrial structure and function in Physarum polycephalum.I.
84
Fine structure, cytochemistry, and 3H-uridine autoradiography of a central body in mitochondria, Exp. Cell Res. 78, 351-359. (1973)
Kuroiwa, T. Studies on mitochondrial structure and function in Physarum polycephalum.
III. Electron microscopy of a large amount of DNA released from a central body in
mitochondria by trypsin digestion. J. Cell Biol. 63, 299-306. (1974)
Kuroiwa, T., Hizume, M. & Kawano, S. Studies on mitochondrial structure and function
in Physarum polycephalum IV. Mitochondrial division cycle. Cytologia. 43: 119-136.
(1978)
Kuroiwa, T., Kawano, S., Nishibayashi, S., and Sato, C. Epifl uorescent microscopic
evidence for maternal inheritance of chloroplast DNA. Nature 298: 481-483. (1982)
Kuroiwa, T. Review of cytological studies on cellular and molecular mechanisms of
uniparental (maternal or paternal) inheritance of plastid and mitochondrial genomes
induced by active digestion of organelle nuclei (nucleoids). J. Plant. Res. 123, 207–230.
(2010)
Li, L, Y., Luo, X. & Wang, X. Endonuclease G is an apoptotic DNase when released from
mitochondria. Nature 412, 95–99. (2001)
Mary, B, M., & Herschel, K, M. Observations on the Behavior of Suppressors in
Neurospora. PNAS 38 (3) 205-214. (1952)
Min, F., Dipak, P., Joe, J, D., Thomas, C., Dietrich, S., Ihtshamul, H., & Jon, R, S. Roles
of divalent metal ions in flap endonuclease–substrate interactions. Nat structural & mol
bio (11)5: 450-456. (2004)
Mittal, S., Aslam, A., Doidge, R., Medica, R. & Winkler, G, S. The Ccr4a (CNOT6) and
Ccr4b (CNOT6L) deadenylase subunits of the human Ccr4-Not complex contribute to
85
the prevention of cell death and senescence. Mol Biol Cell 22(6):748-58. (2011)
Mirfakhrai, M., Tanaka, Y., & Yanagisawa, K. Evidence for mitochondrial DNA
polymorphism and uniparental inheritance in the cellular slime mold Polysphondylium
pallidum: effect of intraspecies mating on mitochondrial DNA transmission. Genetics 24:
607–613. (1990)
Moriyama, Y., & Kawano, S. Rapid, selective digestion of mitochondrial DNA in
accordance with the matA hierarchy of multiallelic mating types in the mitochondrial
inheritance of Pysarum polycephalum. Genetics 164:963-975. (2003)
Moriyama, Y., Yamazaki, T., Nomura, H., Sasaki, N., & Kawano, S. Early zygote-specific
nuclease in mitochondria of the true slime mold Physarum polycephalum. Curr Genet 48:
334-343. (2005)
Moriyama, Y., & Kawano, S. Maternal inheritance of mitochondria: multipolarity,
multiallelism and hierarchical transmission of mitochondrial DNA in the true slime mold
Physarum polycephalum. J Plant Res;123(2):139-48. (2010)
Nishimura, Y., Yoshinari, T., Naruse, K., Yamada, T., Sumi, K., Mitani, H., Higashiyama,
T., & Kuroiwa, T. Active digestion of sperm mitochondrial DNA in single living sperm
revealed by optical tweezers. PNAS 103: 1382-1387. (2006)
Nishimura, Y., Shikanai, T., Kawamoto, S. & Toh-e, A. Step-wise elimination of αmitochondrial nucleoids and mitochondrial structure as a basis for the strict uniparental
inheritance in Cryptococcus neoformans. Sci Rep: 2045-2322. (2020)
Obaidur Rahman. Investigating the role of TATDN3 in Mitochondria. Master’s Thesis:
University of Eastern Finland. (2018)
Ohsato, T., Ishihara, N., Muta, T., Umeda, S., Ikeda, S., Mihara, K., Hamasaki, N. & Kang,
D. Mammalian mitochondrial endonuclease G. Digestion of R‐loops and localization in
86
intermembrane space. Eur J Biochem 269, 5765–5770. (2002)
Patrick, J. K. The endosymbiotic origin, diversification and fate of plastids. Philos Trans
R Soc Lond B Biol Sci. 12;365(1541):729-48. (2010)
Qinghua, Z. Haimin, L., Hanzeng, L., Nakagawa, A., Jason, L, J., Eui-Seung, L., Harry,
L, B., Skeen-Gaar, R, R., Suehiro, Y., William, D., Mitani, S., Yuan, H, S., Byung-Ho, K.,
& Xue, D. Mitochondrial endonuclease G mediates breakdown of paternal mitochondria
upon fertilization. Science 353: 394-399. (2016)
Rawi, A, S., Louvet-Vallée, S., Djeddi, A., Sachse, M., Culetto, E., Hajjar, C., Boyd, L.,
Legouis, R., & Galy, V. Postfertilization autophagy of sperm organelles prevents paternal
mitochondrial DNA transmission. Science. 334(6059):1144-7. (2011)
Rebecca, R., Moon-Yong, C. & David, C, C. Elimination of paternal mitochondria in
mouse embryos occurs through autophagic degradation dependent on PARKIN and
MUL1. Elife. 5: e17896. (2016)
Reilly, J. G., & Thomas, C. A. Jr. Length polymorphisms, restriction site variation, and
maternal inheritance of mitochondrial DNA of Drosophila melanogaster. Plasmid 3: 109–
115. (1980)
Rong, Y., Shao-Bo, J., Urban, L., Monica, N., & Jian, Z. Human Fis1 regulates
mitochondrial dynamics through inhibition of the fusion machinery. EMBO J. 15; 38(8):
e99748. (2019)
Sasaki, N., Suzuki, T., Ohta, T., Kawano, S. & Kuroiwa, T. Behavior of mitochondria and
their nuclei during cell proliferation in Physarum polycephalum. Protoplasma. 182: 115125. (1994)
Sasaki, N., Sakai, A., Kawano, S., Kuroiwa, H., & Kuroiwa, T. DNA synthesis in isolated
87
mitochondrial nucleoids from plasmodia of Physarum polycephalum. Protoplasma 203,
221–231. (1998)
Sasaki, N., Kuroiwa, H., Nishitani, C., Takano, H., Higashiyama, T., Kobayashi, T., Shirai,
Y., Sasaki, A., Kawano, S., Murakami, K., & Kuroiwa, T. Glom is a novel mitochondrial
DNA packaging protein in Physarum polycephalum and causes intense chromatin
condensation without suppressing DNA functions. Mol Biol Cell 12:4758–4769. (2003)
Sasaki, T., Sato, Y., Higashiyama, T. & Sasaki, N. Live imaging reveals the dynamics and
regulation of mitochondrial nucleoids during the cell cycle in Fucci2-HeLa cells. Sci Rep.
7: 11257. (2017)
Sato, M., & Sato, K. Degradation of paternal mitochondria by fertilization-triggered
autophagy in C. elegans embryos. Science. 334(6059):1141-4. (2011)
Sato, M. & Sato, K. Maternal inheritance of mitochondrial DNA by diverse mechanisms
to eliminate paternal mitochondrial DNA. Biochim Biophys Acta. 1833(8):1979-84.
(2013)
Sato, M., Sato, K., Tomura, K., Kosako, H. & Sato, K. The autophagy receptor ALLO-1
and the IKKE-1 kinase control clearance of paternal mitochondria in Caenorhabditis
elegans. Nat Cell Biol. 20(1):81-91. (2018)
Seung-Wook, R., Hyeon, J, J., Myunghwan, C., Mariusz, K., & Chulhee, C. Optic atrophy
3 as a protein of the mitochondrial outer membrane induces mitochondrial fragmentation.
Cell Mol Life Sci. 67(16):2839-50. (2010)
Shinnick, T. M., Pallotta, D. J., Jones-Brown, Y. V. R., Youngman, P. J., & Holt, C, E. A
gene imz affecting the pH sensitivity of zygote formation in Physarum polycephalum.
Curr Microbiol 1: 163-166. (1978)
88
Shuang-yong, X., Anna, R, C., Siu-Hong, C., Yu, Z., & Patrick, L. A type IV modificationdependent restriction enzyme SauUSI from Staphylococcus aureus. subsp. aureus
USA300. Nucleic Acids Res. 39(13): 5597–5610. (2011)
Specht, C. A., Novotnym, C. P., & Ullrich, R. C. Mitochondrial DNA of Schizophyllum
commune: restrictionmap, genetic map, and mode of inheritance. Curr Genet 22:129-134.
(1992)
Steven, Z. D., & Patrick, H. O. Barriers to Male Transmission of Mitochondrial DNA in
Sperm Development. Dev Cell 22(3): 660-668. (2012)
Strepp, R., Scholz, S., Kruse, S., Speth, V., & Reski, R. Plant nuclear gene knockout
reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ,
an ancestral tubulin. Proc Natl Acad Sci U S A. 14; 95(8):4368-73. (1998)
Stuart, J, A., Hashiguchi, K., Wilson, D, M, 3rd., Copeland, W, C., Souza‐Pinto, N, C. &
Bohr, V, A. DNA base excision repair activities and pathway function in mitochondrial
and cellular lysates from cells lacking mitochondrial DNA. Nucleic Acids Res 32, 2181–
2192. (2004)
Sutovsky, P., Moreno, D, R., Ramalho-Santos, J., Dominko, T., Simerly, C., & Schatten,
G. Ubiquitin tag for sperm mitochondria. Nature volume 402, pages371–372. (1999)
Sutovsky, P., Moreno, D, R., Ramalho-Santos, J., Dominko, T., Simerly, C., & Schatten,
G. Ubiquitinated sperm mitochondria, selective proteolysis, and the regulation of
mitochondrial inheritance in mammalian embryos. Biol Reprod. 63(2):582-90. (2000)
Szczesny, B. & Mitra, S. Effect of aging on intracellular distribution of abasic (AP)
endonuclease 1 in the mouse liver. Mech Ageing Dev 126, 1071–1078. (2005)
Szczesny, R, J., Hejnowicz, M, S., Steczkiewicz, K., Muszewska, A., Borowski, L, S.,
89
Ginalski, K. & Dziembowski, A. Identification of a novel human mitochondrial endo‐
/exonuclease Ddk1/c20orf72 necessary for maintenance of proper 7S DNA levels.
Nucleic Acids Res 41, 3144–3161. (2013)
Takano, H., Abe, T., Sakurai, R., Moriyama, Y., Miyazawa, Y., Nozaki, H., Kawano, S.,
Sasaki, N. & Kuroiwa, T. The complete DNA sequence of the mitochondrial genome of
Physarum polycephalum. Mol Gen Genet 264:539–545. (2001)
Tann, A, W., Boldogh, I., Meiss, G., Qian, W., Van-Houten, B., Mitra, S. & Szczesny, B.
Apoptosis induced by persistent single‐strand breaks in mitochondrial genome: critical
role of EXOG (5′‐EXO/endonuclease) in their repair. J Biol Chem 286, 31975–31983.
(2011)
Tigchelaar, W., Yu, H., de-Jong, A, M., van-Gilst, W, H., van-der-Harst, P., Westenbrink,
B, D., de-Boer, R, A. & Sillje, H, H. Loss of mitochondrial exo/endonuclease EXOG
affects mitochondrial respiration and induces ROS‐mediated cardiomyocyte hypertrophy.
Am J Physiol Cell Physiol 308, C155–C163. (2015)
Tsuchimoto, D., Sakai, Y., Sakumi, K., Nishioka, K., Sasaki, M., Fujiwara, T. &
Nakabeppu, Y. Human APE2 protein is mostly localized in the nuclei and to some extent
in the mitochondria, while nuclear APE2 is partly associated with proliferating cell
nuclear antigen. Nucleic Acids Res 29, 2349–2360. (2001)
Uno, K., Sugimoto, N. & Sato, Y. N-aryl pyrido cyanine derivatives are nuclear and
organelle DNA markers for two-photon and super-resolution imaging. Nat Commun.
11;12(1):2650. (2021)
Wei, Y. Nucleases: Diversity of Structure, Function and Mechanism. Q Rev Biophys.
44(1): 1–93. (2011)
Wilch, G., Ward, S., & Castle, A. Transmission of mitochondrial DNA in Ustilago
90
violacea. Curr Genet 22:135-140. (1992)
Youngman, P. J., Pallotta, D. J., Hosler, B., Struhl, G., & Holt, C. E. A new mating
compatibility locus in Physarum polycephalum. Genetics 91: 683-693. (1979)
Zheng, L., Zhou, M., Guo, Z., Lu, H., Qian, L., Dai, H., Qiu, J., Yakubovskaya, E.,
Bogenhagen, D, F., Demple, B., & Shen, B. Human DNA2 is a mitochondrial
nuclease/helicase for efficient processing of DNA replication and repair intermediates.
Mol Cell 32, 325–336. (2008)
浦川直希 母性遺伝における父方ミトコンドリア DNA の選択的分解に関与する
ヌクレアーゼの探索
中村聡
名古屋大学修士論文(2019)
真正粘菌のミトコンドリア母性委遺伝におけるエンドヌクレアーゼ G
様タンパク質の関与について
名古屋大学修士論文 (2021)
山田佳歩 真正粘菌を用いた mt 核様体分裂機構の解析
(2015)
91
名古屋大学修士論文
...