Abe, M., Katsumata, H., Komeda, Y. and Takahashi, T. (2003). Regulation of Shoot
Epidermal Cell Differentiation by a Pair of Homeodomain Proteins in Arabidopsis.
Development 130, 635-643.
Abe, M., Takahashi, T. and Komeda, Y. (2001). Identification of a Cis-Regulatory
Element for L1 Layer-Specific Gene Expression, which is Targeted by an L1-Specific
Homeodomain Protein. Plant J. 26, 487-494.
Bach, L., Michaelson, L. V., Haslam, R., Bellec, Y., Gissot, L., Marion, J., Da
Costa, M., Boutin, J. P., Miquel, M., Tellier, F. et al. (2008). The very-Long-Chain
Hydroxy Fatty Acyl-CoA Dehydratase PASTICCINO2 is Essential and Limiting for
Plant Development. Proc. Natl. Acad. Sci. U. S. A. 105, 14727-14731.
Beaudoin, F., Wu, X., Li, F., Haslam, R. P., Markham, J. E., Zheng, H., Napier, J.
A. and Kunst, L. (2009). Functional Characterization of the Arabidopsis BetaKetoacyl-Coenzyme A Reductase Candidates of the Fatty Acid Elongase. Plant Physiol.
150, 1174-1191.
Berkey, R., Bendigeri, D. and Xiao, S. (2012). Sphingolipids and Plant
Defense/Disease: The "Death" Connection and Beyond. Front. Plant. Sci. 3, 68.
Blilou, I., Xu, J., Wildwater, M., Willemsen, V., Paponov, I., Friml, J., Heidstra,
R., Aida, M., Palme, K. and Scheres, B. (2005). The PIN Auxin Efflux Facilitator
Network Controls Growth and Patterning in Arabidopsis Roots. Nature 433, 39.
Bruck, D. K. and Walker, D. B. (1985). Cell Determination during Embryogenesis in
Citrus Jambhiri. I. Ontogeny of the Epidermis. Botanical Gazette 146, 188-195.
Cacas, J. L., Bure, C., Grosjean, K., Gerbeau-Pissot, P., Lherminier, J., Rombouts,
Y., Maes, E., Bossard, C., Gronnier, J., Furt, F. et al. (2016). Revisiting Plant Plasma
Membrane Lipids in Tobacco: A Focus on Sphingolipids. Plant Physiol. 170, 367-384.
Chapman, E. J. and Estelle, M. (2009). Mechanism of Auxin-Regulated Gene
Expression in Plants. Annu. Rev. Genet. 43, 265-285.
125
Clark, B. J., Wells, J., King, S. R. and Stocco, D. M. (1994). The Purification,
Cloning, and Expression of a Novel Luteinizing Hormone-Induced Mitochondrial
Protein in MA-10 Mouse Leydig Tumor Cells. Characterization of the Steroidogenic
Acute Regulatory Protein (StAR). J. Biol. Chem. 269, 28314-28322.
Clough, S. J. and Bent, A. F. (1998). Floral Dip: A Simplified Method for
Agrobacterium-Mediated Transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
Devaux, P. F. and Morris, R. (2004). Transmembrane Asymmetry and Lateral
Domains in Biological Membranes. Traffic 5, 241-246.
Dong, J., MacAlister, C. A. and Bergmann, D. C. (2009). BASL Controls
Asymmetric Cell Division in Arabidopsis. Cell 137, 1320-1330.
Dowler, S., Kular, G. and Alessi, D. R. (2002). Protein Lipid Overlay Assay.
Sci.STKE 2002, pl6.
Friml, J., Wiśniewska, J., Benková, E., Mendgen, K. and Palme, K. (2002). Lateral
Relocation of Auxin Efflux Regulator PIN3 Mediates Tropism in Arabidopsis. Nature
415, 806.
Galletti, R., Verger, S., Hamant, O. and Ingram, G. C. (2016). Developing a 'Thick
Skin': A Paradoxical Role for Mechanical Tension in Maintaining Epidermal Integrity?
Development 143, 3249-3258.
Gifford, M. L., Dean, S. and Ingram, G. C. (2003). The Arabidopsis ACR4 Gene
Plays a Role in Cell Layer Organisation during Ovule Integument and Sepal Margin
Development. Development 130, 4249-4258.
Goldberg, R. B., de Paiva, G. and Yadegari, R. (1994). Plant Embryogenesis: Zygote
to Seed. Science 266, 605-614.
Guilfoyle, T. J. and Hagen, G. (2007). Auxin Response Factors. Curr. Opin. Plant
Biol. 10, 453-460.
Hagen, G. and Guilfoyle, T. (2002). Auxin-Responsive Gene Expression: Genes,
Promoters and Regulatory Factors. Plant Mol. Biol. 49, 373-385.
126
Hanada, K., Kumagai, K., Yasuda, S., Miura, Y., Kawano, M., Fukasawa, M. and
Nishijima, M. (2003). Molecular Machinery for Non-Vesicular Trafficking of
Ceramide. Nature 426, 803-809.
Iida, H., Yoshida, A. and Takada, S. (2019). ATML1 Activity is Restricted to the
Outermost Cells of the Embryo through Post-Transcriptional Repressions. Development
146, 10.1242/dev.169300.
Ishikawa, T., Aki, T., Yanagisawa, S., Uchimiya, H. and Kawai-Yamada, M.
(2015). Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain
Proteins to Stress. Plant Physiol. 169, 1333-1343.
Ishikawa, T., Fang, L., Rennie, E. A., Sechet, J., Yan, J., Jing, B., Moore, W.,
Cahoon, E. B., Scheller, H. V. and Kawai-Yamada, M. (2018). GLUCOSAMINE
INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) is a GlcNAcContaining Glycosylinositol Phosphorylceramide Glycosyltransferase. Plant Physiol.
177, 938-952.
Ishikawa, T., Ito, Y. and Kawai‐Yamada, M. (2016). Molecular Characterization
and Targeted Quantitative Profiling of the Sphingolipidome in Rice. Plant J. 88, 681693.
Jarsch, I. K., Konrad, S. S., Stratil, T. F., Urbanus, S. L., Szymanski, W., Braun,
P., Braun, K. and Ott, T. (2014). Plasma Membranes are Subcompartmentalized into a
Plethora of Coexisting and Diverse Microdomains in Arabidopsis and Nicotiana
benthamiana. Plant Cell 26, 1698-1711.
Jiang, Z., Zhou, X., Tao, M., Yuan, F., Liu, L., Wu, F., Wu, X., Xiang, Y., Niu, Y.,
Liu, F. et al. (2019). Plant Cell-Surface GIPC Sphingolipids Sense Salt to Trigger
Ca(2+) Influx. Nature 572, 341-346.
Joubes, J., Raffaele, S., Bourdenx, B., Garcia, C., Laroche-Traineau, J., Moreau,
P., Domergue, F. and Lessire, R. (2008). The VLCFA Elongase Gene Family in
Arabidopsis thaliana: Phylogenetic Analysis, 3D Modelling and Expression Profiling.
Plant Mol. Biol. 67, 547-566.
127
Jurgens, G. (1995). Axis Formation in Plant Embryogenesis: Cues and Clues. Cell 81,
467-470.
Kaiser, H. J., Lingwood, D., Levental, I., Sampaio, J. L., Kalvodova, L.,
Rajendran, L. and Simons, K. (2009). Order of Lipid Phases in Model and Plasma
Membranes. Proc. Natl. Acad. Sci. U. S. A. 106, 16645-16650.
Kitatani, K., Idkowiak-Baldys, J. and Hannun, Y. A. (2008). The Sphingolipid
Salvage Pathway in Ceramide Metabolism and Signaling. Cell. Signal. 20, 1010-1018.
Kumagai, K., Yasuda, S., Okemoto, K., Nishijima, M., Kobayashi, S. and Hanada,
K. (2005). CERT Mediates Intermembrane Transfer of various Molecular Species of
Ceramides. J. Biol. Chem. 280, 6488-6495.
Kumpf, R. P. and Nowack, M. K. (2015). The Root Cap: A Short Story of Life and
Death. J. Exp. Bot. 66, 5651-5662.
Leyser, O. and Day, S. (2009). Mechanisms in Plant Development: John Wiley &
Sons.
Li-Beisson, Y., Shorrosh, B., Beisson, F., Andersson, M. X., Arondel, V., Bates, P.
D., Baud, S., Bird, D., Debono, A., Durrett, T. P. et al. (2013). Acyl-Lipid
Metabolism. Arabidopsis Book 11, e0161.
Lu, P., Porat, R., Nadeau, J. A. and O'Neill, S. D. (1996). Identification of a
Meristem L1 Layer-Specific Gene in Arabidopsis that is Expressed during Embryonic
Pattern Formation and Defines a New Class of Homeobox Genes. Plant Cell 8, 21552168.
Luo, B., Xue, X., Hu, W., Wang, L. and Chen, X. (2007). An ABC Transporter Gene
of Arabidopsis Thaliana, AtWBC11, is Involved in Cuticle Development and
Prevention of Organ Fusion. Plant Cell Physiol. 48, 1790-1802.
Luttgeharm, K. D., Cahoon, E. B. and Markham, J. E. (2016). Substrate Specificity,
Kinetic Properties and Inhibition by Fumonisin B1 of Ceramide Synthase Isoforms from
Arabidopsis. Biochem. J. 473, 593-603.
128
Lv, X., Jing, Y., Xiao, J., Zhang, Y., Zhu, Y., Julian, R. and Lin, J. (2017).
Membrane Microdomains and the Cytoskeleton Constrain AtHIR1 Dynamics and
Facilitate the Formation of an AtHIR1-Associated Immune Complex. Plant J. 90, 3-16.
Malamy, J. E. and Benfey, P. N. (1997). Organization and Cell Differentiation in
Lateral Roots of Arabidopsis thaliana. Development 124, 33-44.
Markham, J. E., Molino, D., Gissot, L., Bellec, Y., Hematy, K., Marion, J.,
Belcram, K., Palauqui, J. C., Satiat-Jeunemaitre, B. and Faure, J. D. (2011).
Sphingolipids Containing very-Long-Chain Fatty Acids Define a Secretory Pathway for
Specific Polar Plasma Membrane Protein Targeting in Arabidopsis. Plant Cell 23, 23622378.
Merrill Jr, A. H. (2011). Sphingolipid and Glycosphingolipid Metabolic Pathways in
the Era of Sphingolipidomics. Chem. Rev. 111, 6387-6422.
Morell, M., Espargaro, A., Aviles, F. X. and Ventura, S. (2007). Detection of
Transient Protein-Protein Interactions by Bimolecular Fluorescence Complementation:
The Abl-SH3 Case. Proteomics 7, 1023-1036.
Msanne, J., Chen, M., Luttgeharm, K. D., Bradley, A. M., Mays, E. S., Paper, J.
M., Boyle, D. L., Cahoon, R. E., Schrick, K. and Cahoon, E. B. (2015).
Glucosylceramides are Critical for Cell-Type Differentiation and Organogenesis, but
Not for Cell Viability in Arabidopsis. Plant J. 84, 188-201.
Murashige, T. and Skoog, F. (1962). A Revised Medium for Rapid Growth and Bio
Assays with Tobacco Tissue Cultures. Physiol. Plantarum 15, 473-497.
Nagano, M., Ishikawa, T., Fujiwara, M., Fukao, Y., Kawano, Y., Kawai-Yamada,
M. and Shimamoto, K. (2016). Plasma Membrane Microdomains are Essential for
Rac1-RbohB/H-Mediated Immunity in Rice. Plant Cell 28, 1966-1983.
Nakamura, M. and Grebe, M. (2018). Outer, Inner and Planar Polarity in the
Arabidopsis Root. Curr. Opin. Plant Biol. 41, 46-53.
Nobusawa, T., Okushima, Y., Nagata, N., Kojima, M., Sakakibara, H. and Umeda,
M. (2013). Synthesis of very-Long-Chain Fatty Acids in the Epidermis Controls Plant
Organ Growth by Restricting Cell Proliferation. PLoS Biol. 11, e1001531.
129
Nobusawa, T. and Umeda, M. (2012). Very-Long-Chain Fatty Acids have an Essential
Role in Plastid Division by Controlling Z-Ring Formation in Arabidopsis thaliana.
Genes Cells 17, 709-719.
Ogawa, E., Yamada, Y., Sezaki, N., Kosaka, S., Kondo, H., Kamata, N., Abe, M.,
Komeda, Y. and Takahashi, T. (2015). ATML1 and PDF2 Play a Redundant and
Essential Role in Arabidopsis Embryo Development. Plant Cell Physiol. 56, 1183-1192.
Panikashvili, D. and Aharoni, A. (2008). ABC-Type Transporters and Cuticle
Assembly: Linking Function to Polarity in Epidermis Cells. Plant. Signal. Behav. 3,
806-809.
Pata, M. O., Hannun, Y. A. and Ng, C. K. (2010). Plant Sphingolipids: Decoding the
Enigma of the Sphinx. New Phytol. 185, 611-630.
Peterson, K. M., Shyu, C., Burr, C. A., Horst, R. J., Kanaoka, M. M., Omae, M.,
Sato, Y. and Torii, K. U. (2013). Arabidopsis Homeodomain-Leucine Zipper IV
Proteins Promote Stomatal Development and Ectopically Induce Stomata Beyond the
Epidermis. Development 140, 1924-1935.
Rennie, E. A., Ebert, B., Miles, G. P., Cahoon, R. E., Christiansen, K. M.,
Stonebloom, S., Khatab, H., Twell, D., Petzold, C. J., Adams, P. D. et al. (2014).
Identification of a Sphingolipid Alpha-Glucuronosyltransferase that is Essential for
Pollen Function in Arabidopsis. Plant Cell 26, 3314-3325.
Rombola-Caldentey, B., Rueda-Romero, P., Iglesias-Fernandez, R., Carbonero, P.
and Onate-Sanchez, L. (2014). Arabidopsis DELLA and Two HD-ZIP Transcription
Factors Regulate GA Signaling in the Epidermis through the L1 Box Cis-Element. Plant
Cell 26, 2905-2919.
Sato, N. (1985). Lipid Biosynthesis in Epidermal, Guard and Mesophyll Cell
Protoplasts from Leaves of Vicia Faba L. Plant Cell physiol. 26, 805-811.
Scheres, B. (2001). Plant Cell Identity. the Role of Position and Lineage. Plant Physiol.
125, 112-114.
130
Scheres, B., Wolkenfelt, H., Willemsen, V., Terlouw, M., Lawson, E., Dean, C. and
Weisbeek, P. (1994). Embryonic Origin of the Arabidopsis Primary Root and Root
Meristem Initials. Development 120, 2475-2487.
Schmidt, A. (1924). Histologische Studien an Phanerogamen Vegetationspunkten.
Bot.Arch. 8, 345-404.
Schrick, K., Bruno, M., Khosla, A., Cox, P. N., Marlatt, S. A., Roque, R. A.,
Nguyen, H. C., He, C., Snyder, M. P., Singh, D. et al. (2014). Shared Functions of
Plant and Mammalian StAR-Related Lipid Transfer (START) Domains in Modulating
Transcription Factor Activity. BMC Biol. 12, 70-8.
Schrick, K., Nguyen, D., Karlowski, W. M. and Mayer, K. F. (2004). START
Lipid/Sterol-Binding Domains are Amplified in Plants and are Predominantly
Associated with Homeodomain Transcription Factors. Genome Biol. 5, R41-r41. Epub
2004 May 27.
Sessions, A., Weigel, D. and Yanofsky, M. F. (1999). The Arabidopsis thaliana
MERISTEM LAYER 1 Promoter Specifies Epidermal Expression in Meristems and
Young Primordia. Plant J. 20, 259-263.
Silva, L. C., Futerman, A. H. and Prieto, M. (2009). Lipid Raft Composition
Modulates Sphingomyelinase Activity and Ceramide-Induced Membrane Physical
Alterations. Biophys. J. 96, 3210-3222.
Simons, K. and Ikonen, E. (1997). Functional Rafts in Cell Membranes. Nature 387,
569.
Stancevic, B. and Kolesnick, R. (2010). Ceramide-Rich Platforms in Transmembrane
Signaling. FEBS Lett. 584, 1728-1740.
Steiner, D. F. (1998). The Proprotein Convertases. Curr. Opin. Chem. Biol. 2, 31-39.
Stewart, R. N. and Dermen, H. (1975). Flexibility in Ontogeny as shown by the
Contribution of the Shoot Apical Layers to Leaves of Periclinal Chimeras. Am. J. Bot.
62, 935-947.
131
Surma, M. A., Klose, C. and Simons, K. (2012). Lipid-Dependent Protein Sorting at
the Trans-Golgi Network. Biochim. Biophys. Acta 1821, 1059-1067.
Takada, S. and Jurgens, G. (2007). Transcriptional Regulation of Epidermal Cell Fate
in the Arabidopsis Embryo. Development 134, 1141-1150.
Takada, S., Takada, N. and Yoshida, A. (2013). Induction of Epidermal Cell Fate in
Arabidopsis Shoots. Plant. Signal. Behav. 8, e26236.
Takahashi, T., Naito, S. and Komeda, Y. (1992). The Arabidopsis HSP18. 2
Promoter/GUS Gene Fusion in Transgenic Arabidopsis Plants: A Powerful Tool for the
Isolation of Regulatory Mutants of the Heat‐shock Response. Plant J. 2, 751-761.
Tanaka, H., Onouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura, M.,
Machida, C. and Machida, Y. (2001). A Subtilisin-Like Serine Protease is Required
for Epidermal Surface Formation in Arabidopsis Embryos and Juvenile Plants.
Development 128, 4681-4689.
Tanaka, H., Watanabe, M., Sasabe, M., Hiroe, T., Tanaka, T., Tsukaya, H.,
Ikezaki, M., Machida, C. and Machida, Y. (2007). Novel Receptor-Like Kinase
ALE2 Controls Shoot Development by Specifying Epidermis in Arabidopsis.
Development 134, 1643-1652.
Tartaglio, V., Rennie, E. A., Cahoon, R., Wang, G., Baidoo, E., Mortimer, J. C.,
Cahoon, E. B. and Scheller, H. V. (2017). Glycosylation of Inositol
Phosphorylceramide Sphingolipids is Required for Normal Growth and Reproduction in
Arabidopsis. Plant J. 89, 278-290.
Terakura, S., Ueno, Y., Tagami, H., Kitakura, S., Machida, C., Wabiko, H., Aiba,
H., Otten, L., Tsukagoshi, H., Nakamura, K. et al. (2007). An Oncoprotein from the
Plant Pathogen Agrobacterium has Histone Chaperone-Like Activity. Plant Cell 19,
2855-2865.
Trenkamp, S., Martin, W. and Tietjen, K. (2004). Specific and Differential Inhibition
of very-Long-Chain Fatty Acid Elongases from Arabidopsis thaliana by Different
Herbicides. Proc. Natl. Acad. Sci. U. S. A. 101, 11903-11908.
132
Trinh, D. C., Lavenus, J., Goh, T., Boutte, Y., Drogue, Q., Vaissayre, V., Tellier, F.,
Lucas, M., Voss, U., Gantet, P. et al. (2019). PUCHI Regulates Very Long Chain
Fatty Acid Biosynthesis during Lateral Root and Callus Formation. Proc. Natl. Acad.
Sci. U. S. A. 116, 14325-14330.
Tsuwamoto, R., Fukuoka, H. and Takahata, Y. (2008). GASSHO1 and GASSHO2
Encoding a Putative Leucine‐rich Repeat Transmembrane‐type Receptor Kinase are
Essential for the Normal Development of the Epidermal Surface in Arabidopsis
Embryos. Plant J. 54, 30-42.
Ulmasov, T., Liu, Z. B., Hagen, G. and Guilfoyle, T. J. (1995). Composite Structure
of Auxin Response Elements. Plant Cell 7, 1611-1623.
van den Berg, C., Willemsen, V., Hage, W., Weisbeek, P. and Scheres, B. (1995).
Cell Fate in the Arabidopsis Root Meristem Determined by Directional Signalling.
Nature 378, 62.
Watanabe, M., Tanaka, H., Watanabe, D., Machida, C. and Machida, Y. (2004).
The ACR4 Receptor-Like Kinase is Required for Surface Formation of EpidermisRelated Tissues in Arabidopsis thaliana. Plant J. 39, 298-308.
Xing, Q., Creff, A., Waters, A., Tanaka, H., Goodrich, J. and Ingram, G. C. (2013).
ZHOUPI Controls Embryonic Cuticle Formation Via a Signalling Pathway Involving
the Subtilisin Protease ABNORMAL LEAF-SHAPE1 and the Receptor Kinases
GASSHO1 and GASSHO2. Development 140, 770-779.
Yang, S., Johnston, N., Talideh, E., Mitchell, S., Jeffree, C., Goodrich, J. and
Ingram, G. (2008). The Endosperm-Specific ZHOUPI Gene of Arabidopsis Thaliana
Regulates Endosperm Breakdown and Embryonic Epidermal Development.
Development 135, 3501-3509.
Zhang, Y., Guo, X. and Dong, J. (2016). Phosphorylation of the Polarity Protein
BASL Differentiates Asymmetric Cell Fate through MAPKs and SPCH. Current
Biology 26, 2957-2965.
133
Zhang, Y., Wang, P., Shao, W., Zhu, J. and Dong, J. (2015). The BASL Polarity
Protein Controls a MAPK Signaling Feedback Loop in Asymmetric Cell Division.
Developmental Cell 33, 136-149.
Zhou, L. Z., Juranic, M. and Dresselhaus, T. (2017). Germline Development and
Fertilization Mechanisms in Maize. Mol. Plant. 10, 389-401.
134
...