1. Bizzini, A., Durussel, C., Bille, J., Greub, G. & Prod'hom, G. Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 48, 1549-1554 (2010).
2. Seng, P., et al. Ongoing revolution in bacteriology: routine identification of bacteria by matrix- assisted laser desorption ionization time-of-flight mass spectrometry. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 49, 543-551 (2009).
3. Stevenson, L.G., Drake, S.K., Shea, Y.R., Zelazny, A.M. & Murray, P.R. Evaluation of matrix- assisted laser desorption ionization-time of flight mass spectrometry for identification of clinically important yeast species. J Clin Microbiol 48, 3482-3486 (2010).
4. van Veen, S.Q., Claas, E.C. & Kuijper, E.J. High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories. J Clin Microbiol 48, 900-907 (2010).
5. Niimi, H., et al. Melting Temperature Mapping Method: A Novel Method for Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Sample Collection. Sci Rep 5, 12543 (2015).
6. Pulido, M.R., Garcia-Quintanilla, M., Martin-Pena, R., Cisneros, J.M. & McConnell, M.J. Progress on the development of rapid methods for antimicrobial susceptibility testing. J Antimicrob Chemother 68, 2710-2717 (2013).
7. Tuite, N., Reddington, K., Barry, T., Zumla, A. & Enne, V. Rapid nucleic acid diagnostics for the detection of antimicrobial resistance in Gram-negative bacteria: is it time for a paradigm shift? J Antimicrob Chemother 69, 1729-1733 (2014).
8. Anjum, M.F., Zankari, E. & Hasman, H. Molecular Methods for Detection of Antimicrobial Resistance. Microbiol Spectr 5(2017).
9. Sparbier, K., Schubert, S., Weller, U., Boogen, C. & Kostrzewa, M. Matrix-assisted laser desorption ionization-time of flight mass spectrometry-based functional assay for rapid detection of resistance against beta-lactam antibiotics. J Clin Microbiol 50, 927-937 (2012).
10. Burckhardt, I. & Zimmermann, S. Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5 hours. J Clin Microbiol 49, 3321-3324 (2011).
11. Kempf, M., et al. Rapid detection of carbapenem resistance in Acinetobacter baumannii using matrix-assisted laser desorption ionization-time of flight mass spectrometry. PLoS One 7, e31676 (2012).
12. Charnot-Katsikas, A., et al. Use of the Accelerate Pheno System for Identification and Antimicrobial Susceptibility Testing of Pathogens in Positive Blood Cultures and Impact on Time to Results and Workflow. J Clin Microbiol 56(2018).
13. Lutgring, J.D., et al. Evaluation of the Accelerate Pheno System: Results from Two Academic Medical Centers. J Clin Microbiol 56(2018).
14. Marschal, M., et al. Evaluation of the Accelerate Pheno System for Fast Identification and Antimicrobial Susceptibility Testing from Positive Blood Cultures in Bloodstream Infections Caused by Gram-Negative Pathogens. J Clin Microbiol 55, 2116-2126 (2017).
15. Pancholi, P., et al. Multicenter Evaluation of the Accelerate PhenoTest BC Kit for Rapid Identification and Phenotypic Antimicrobial Susceptibility Testing Using Morphokinetic Cellular Analysis. J Clin Microbiol 56(2018).
16. Choi, J., et al. Direct, rapid antimicrobial susceptibility test from positive blood cultures based on microscopic imaging analysis. Sci Rep 7, 1148 (2017).
17. Mezger, A., et al. A general method for rapid determination of antibiotic susceptibility and species in bacterial infections. J Clin Microbiol 53, 425-432 (2015).
18. Beuving, J., van der Donk, C.F., Linssen, C.F., Wolffs, P.F. & Verbon, A. Evaluation of direct inoculation of the BD PHOENIX system from positive BACTEC blood cultures for both Gram- positive cocci and Gram-negative rods. BMC Microbiol 11, 156 (2011).
19. de Cueto, M., Ceballos, E., Martinez-Martinez, L., Perea, E.J. & Pascual, A. Use of positive blood cultures for direct identification and susceptibility testing with the vitek 2 system. J Clin Microbiol 42, 3734-3738 (2004).
20. Prod'hom, G., Durussel, C. & Greub, G. A simple blood-culture bacterial pellet preparation for faster accurate direct bacterial identification and antibiotic susceptibility testing with the VITEK 2 system. J Med Microbiol 62, 773-777 (2013).
21. Romero-Gomez, M.P., Gomez-Gil, R., Pano-Pardo, J.R. & Mingorance, J. Identification and susceptibility testing of microorganism by direct inoculation from positive blood culture bottles by combining MALDI-TOF and Vitek-2 Compact is rapid and effective. J Infect 65, 513-520 (2012).
22. Wheat, P.F., Hastings, J.G. & Spencer, R.C. Rapid antibiotic susceptibility tests on Enterobacteriaceae by ATP bioluminescence. J Med Microbiol 25, 95-99 (1988).
23. Wheat, P.F., Spencer, R.C. & Hastings, J.G. A novel luminometer for rapid antimicrobial susceptibility tests on gram-positive cocci by ATP bioluminescence. J Med Microbiol 29, 277-282 (1989).
24. Park, C.H., Hixon, D.L., McLaughlin, C.M. & Cook, J.F. Rapid detection (4 h) of methicillin- resistant Staphylococcus aureus by a bioluminescence method. J Clin Microbiol 26, 1223-1224 (1988).
25. Ivancic, V., et al. Rapid antimicrobial susceptibility determination of uropathogens in clinical urine specimens by use of ATP bioluminescence. J Clin Microbiol 46, 1213-1219 (2008).
26. Kouda, M., et al. Bioluminescent Assay as a Potential Method of Rapid Susceptibility Testing. Microbiol Immunol 29, 309-315 (1985).
27. Kapoor, R. & Yadav, J.S. Development of a rapid ATP bioluminescence assay for biocidal susceptibility testing of rapidly growing mycobacteria. J Clin Microbiol 48, 3725-3728 (2010).
28. Nilsson, L.E., Hoffner, S.E. & Ansehn, S. Rapid susceptibility testing of Mycobacterium tuberculosis by bioluminescence assay of mycobacterial ATP. Antimicrob Agents Chemother 32, 1208-1212 (1988).
29. Limb, D.I., Wheat, P.F., Hastings, J.G. & Spencer, R.C. Antimicrobial susceptibility testing of mycoplasmas by ATP bioluminescence. J Med Microbiol 35, 89-92 (1991).
30. Yoshida, T., Uchida, K. & Yamaguchi, H. An ATP bioluminescence assay applicable to rapid fluconazole susceptibility testing of dermatophytes. Microbiol Immunol 41, 377-386 (1997).
31. Hattori, N., Nakajima, M.O., O'Hara, K. & Sawai, T. Novel antibiotic susceptibility tests by the ATP-bioluminescence method using filamentous cell treatment. Antimicrob Agents Ch 42, 1406- 1411 (1998).
32. Odenholt, I., Isaksson, B., Nilsson, L. & Cars, O. Postantibiotic and bactericidal effect of imipenem against Pseudomonas aeruginosa. Eur J Clin Microbiol Infect Dis 8, 136-141 (1989).
33. Hanberger, H., Nilsson, L.E., Kihlstrom, E. & Maller, R. Postantibiotic effect of beta-lactam antibiotics on Escherichia coli evaluated by bioluminescence assay of bacterial ATP. Antimicrob Agents Chemother 34, 102-106 (1990).
34. Bos, J., et al. Emergence of antibiotic resistance from multinucleated bacterial filaments. Proc Natl Acad Sci U S A 112, 178-183 (2015).
35. Chambers, H.F. Methicillin-resistant staphylococci. Clinical microbiology reviews 1, 173-186 (1988).
36. Granier, S.A., et al. False susceptibility of Klebsiella oxytoca to some extended-spectrum cephalosporins. Journal of Antimicrobial Chemotherapy 50, 303-U316 (2002).
37. Wiegand, I., Hilpert, K. & Hancock, R.E. Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc 3, 163-175 (2008).
38. Aldred, K.J., Kerns, R.J. & Osheroff, N. Mechanism of quinolone action and resistance. Biochemistry 53, 1565-1574 (2014).