Ahmad, F., Ahmad, I., and Khan, M. S. (2008) Screening of free -living rhizospheric
bacteria for their multiple plant growth promoting activities. Microbiol Res 163:
173–181.
Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995) Phylogenetic identification
and
in
situ
detection
of
individual
microbial
cells
without
cultivation.
Microbiological reviews 59.1: 143-169.
Ambreetha,
S.,
and
Balachandar,
D.
(2023)
SCAR
marker:
potential
tool
for
authentication of agriculturally important microorganisms. J Basic Microbiol
63.1: 4-16.
Anda, M., Ikeda, S., Eda, S., Okubo, T., Sato, S., Tabata, S. , et al. (2011) Isolation
and genetic characterization of Aurantimonas and Methylobacterium strains from
stems of hypernodulated soybeans. Microbes Environ 26.2: 172-180.
Andersen, J. B., Koch, B., Nielsen, T. H., Sørensen , D., Hansen, M., Nybroe, O., et
al . (2003) Surface motility in Pseudomonas sp. DSS73 is required for efficient
biological containment of the root -pathogenic microfungi Rhizoctonia solani and
Pythium ultimum . Microbiology 149.1: 37-46.
Anguita-Maeso, M., Olivares-García, C., Haro, C., Imperial, J., Navas-Cortés, J. A.,
and
Landa,
B.
B.
(2020)
Culture -dependent
and
culture-independent
characterization of the olive xylem microbiota: effect of sap extraction methods.
Front Plant Sci 10: 1708.
Antoun, H., Beauchamp, C.J., Goussard, N., Chabot, R., and Lalande, R. (1998)
Potential of Rhizobium and Bradyrhizobium species as plant growth promoting
rhizobacteria on non-legumes: effect on radishes ( Raphanus sativus L.). In
Molecular microbial ecology of the soil . Springer, Dordrecht, pp. 57–67.
Asaf, S., Khan, M. A., Khan, A. L., Waqas, M., Shahzad, R., Kim, A. Y., et al. (2017)
Bacterial endophytes from arid land plants regulate endogenous hormone content
and promote growth in crop plants: an example of Sphingomonas sp. and Serratia
marcescens . J Plant Interact 12.1: 31-38.
106
Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J., and Weightman, A. J.
(2006) New screening software shows that most recent large 16S rRNA gene clone
libraries contain chimeras. Appl Environ Microbiol 72: 5734–5741.
Bal, H. B., Nayak, L., Das, S., and Adhya, T. K. (2013) Isolation of ACC deaminase
producing PGPR from rice rhizosphere and evaluating their plant growth promoting
activity under salt stress. Plant Soil 366: 93–105.
Bandeppa, S., Phule, A. S., Rajani, G., Babu, K. V., Barbadikar, K. M., Babu, M. B.
B., et al. (2022). Effect of nitrogen-fixing bacteria on germination, seedling
vigour and growth of two rice ( Oryza sativa L.) cultivars. Int j plant soil sci
34.16: 94-106.
Barazani, O. Z., and Friedman, J. (1999) Is IAA the major root growth factor secreted
from plant-growth-mediating bacteria? J Chem Ecol 25: 2397–2406.
Bell, C. W., Asao, S., Calderon, F., Wolk, B., and Wallenstein, M. D. (2015) Plant
nitrogen uptake drives rhizosphere bacterial community assembly during plant
growth. Soil Biol Biochem 85: 170-182.
Berrios, L., and Ely, B. (2020) Plant growth enhancement is not a conserved feature
in the Caulobacter genus. Plant and Soil 449: 81-95.
Bertoldo, G., Della Lucia, M. C., Squartini, A., Concheri, G., Broccanello, C.,
Romano, A., et al . (2021) Endophytic microbiome responses to sulfur availability
in Beta vulgaris (L.). Int J Mol Sci 22.13: 7184.
Bodenhausen, N., Horton, M. W., and Bergelson, J. (20 13) Bacterial communities
associated with the leaves and the roots of Arabidopsis thaliana . PloS One 8:
e56329.
Bolyen, E., Rideout, J.R., Dillon, M.R., Bokulich, N.A., Abnet, C.C., Al -Ghalith,
G.A., et al . (2019) Reproducible, interactive, scalable and extensible microbiome
data science using QIIME 2. Nat Biotechnol 37: 852–857.
Broccanello, C., Ravi, S., Deb, S., Bolton, M., Secor, G., Richards, C., et al .
(2022). Bacterial endophytes as indicators of susceptibility to Cercospora Leaf
Spot (CLS) disease in Beta vulgaris L. Sci Rep 12.1: 10719.
Buyer, J. S. (1995) A soil and rhizosphere microorganism isolation and enumeration
107
medium that inhibits Bacillus mycoides . Appl Environ Microbiol 61.5: 1839-1842.
Çakmakçi, R., Kantar, F., and Algur, Ö. F. (1999) Sugar beet and barley yields in
relation
to
Bacillus
polymyxa
and
Bacillus
megaterium
var.
phosphaticum
inoculation. J Plant Nutr Soil Sci 162: 437–442.
Çakmakçi
R.,
Kantar,
F.,
and
Sahin,
F.
(2001)
Effect
of
N 2 -fixing
bacterial
inoculations on yield of sugar beet and barley. J Plant Nutr Soil Sci 164: 527–
531.
Çakmakçi, R., Dönmez, F., Aydın, A., and Şahin, F. (2006) Growth promotion of plants
by plant growth-promoting rhizobacteria under greenhouse and two diff erent field
soil conditions. Soil Biol Biochem 38: 1482–1487.
Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello,
E.K., et al . (2010) QIIME allows analysis of high -throughput community sequencing
data. Nat Methods 7: 335–336.
Caporaso J.G., Lauber, C.L., Walters, W.A., Berg-Lyons, D., Lozupone, C.A., Turnbaugh,
P.J., et al . (2011) Global patterns of 16S rRNA diversity at a depth of millions
of sequences per sample. Proc Natl Acad Sci USA 108 Suppl 1: 4516–4522.
Cardinale, M., Ratering, S., Suarez, C., Montoya, A. M. Z., Geissler -Plaum, R., and
Schnell, S. (2015). Paradox of plant growth promotion potential of rhizobacteria
and their actual promotion effect on growth of barley ( Hordeum vulgare L.) under
salt stress. Microbiological research 181: 22–32.
Chaparro, J. M., Badri, D. V., and Vivanco, J. M. (2014) Rhizosphere microbiome
assemblage is affected by plant development. ISME J 8.4: 790-803.
Chhetri, G., Kim, I., Kang, M., Kim, J., So, Y., and Seo, T. (2022) Devosia rhizoryzae
sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members
of the genus Devosia , isolated from the rhizosphere of rice plants. J Microbiol
60: 1–10.
Choudhary, D. K., Kasotia, A., Jain, S., Vaishnav, A., Kumari, S., Sharma, K. P., et
al . (2016) Bacterial-mediated tolerance and resistance to plants under abiotic
and biotic stresses. J Plant Growth Regul 35: 276-300.
Cole, J. R., Wang, Q., Fish, J. A., Chai, B., McGarrell, D. M., Sun, Y., et al . (2014)
108
Ribosomal Database Project: data and tools for high throughput rRNA analysis.
Nucleic Acids Res 42: D633–D642.
Compant, S., Clément C., and Sessitsch, A. (2010) Plant gr owth-promoting bacteria in
the rhizo- and endosphere of plants: their role, colonization, mechanisms involved
and prospects for utilization. Soil Biol Biochem 42: 669–678.
Coombs, J. T., Michelsen, P. P., and Franco, C. M. (2004) Evaluation of endophytic
actinobacteria as antagonists of Gaeumannomyces graminis var. tritici in wheat.
Biol Control 29.3: 359-366.
Dastogeer, K. M., Tumpa, F. H., Sultana, A., Akter, M. A., and Chakraborty, A. (2020)
Plant microbiome–an account of the factors that shape community composition and
diversity. Curr Plant Biol 23: 100161.
de Boer, W., Wagenaar, A.M., Klein Gunnewiek, P.J., and van Veen, J.A. (2007) In
vitro suppression of fungi caused by combinations of apparently non -antagonistic
soil bacteria. FEMS Microbiol Ecol 59: 177–185.
Della Lucia, M. C., Bertoldo, G., Broccanello, C., Maretto, L., Ravi, S., Marinello,
F., et al . (2021) Novel effects of leonardite-based applications on sugar beet.
Front. Plant Sci 12: 646025.
Delmotte, N., Knief, C., Chaffron, S., Innerebner, G., Roschitzki, B., Schlapbach,
R., e t al. (2009) Community proteogenomics reveals insights into the physiology
of phyllosphere bacteria. Proc Natl Acad Sci USA 106: 16428–16433.
Dias, A. C., Costa, F. E., Andreote, F. D., Lacava, P. T., Teixeira, M. A., Assumpção,
L. C., Araújo, W. L., Azevedo, J. L., and Melo, I. S. (2009) Isolation of
micropropagated strawberry endophytic bacteria and assessment of their potential
for plant growth promotion. World J Microbiol 25: 189-195.
Duca, D. R., and Glick, B. R. (2020) Indole-3-acetic acid biosynthesis and its
regulation in plant-associated bacteria. Appl Microbiol Biotechnol 104: 86078619.
Dunne, C., Moënne-Loccoz, Y., McCarthy, J., Higgins, P., Powell, J., Dowling, D. N.,
and O'gara, F. (1998) Combining proteolytic and phloroglucinol -producing bacteria
for improved biocontrol of Pythium -mediated damping-off of sugar beet. Plant
109
Pathol 47: 299–307.
Doumbou, C. L., Hamby Salove, M. K., Crawford, D. L., and Beaulieu, C. (2001)
Actinomycetes , promising tools to control plant diseases and to promote plant
growth. Phytoprotection 82: 85–102.
Emmett, B. D., Buckley, D. H., and Drinkwater, L. E. (2020) Plant growth rate and
nitrogen uptake shape rhizosphe re bacterial community composition and activity
in an agricultural field. New Phytol 225.2: 960-973.
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the
bootstrap. Evolution 39: 783–791.
FAOSTAT (2022) Available online at: https://www.fao.org/faostat/en/#data (accessed
June 24, 2022).
Fierer, N., Bradford, M.
A.,
and
Jackson, R.
B. (2007) Toward an ecological
classification of soil bacteria. Ecology 88: 1354–1364.
Francis, I. M., Jochimsen, K. N., de Vos, P., and van Bruggen, A. H. (2014)
Reclassification of rhizosphere bacteria including strains causing corky root of
lettuce
and
proposal
of
Rhizorhapis
suberifaciens
gen.
nov.,
comb.
nov.,
Sphingobium mellinum sp. nov., Sphingobium xanthum sp. nov. and Rhizorhabdus
argentea gen. nov., sp. nov. Int J Syst Evol Microbiol 64: 1340–1350.
笛木 伸 彦 . (2011) て ん菜 の適 正 施肥 管 理に よる コス ト 削減 . 北 農 78: 133-138.
藤田 直 聡、 辻博 之 、有 岡 敏也 . (2020) 稼 働費 用 の比 較 から 見た て ん菜 新 技術 の導 入 に必 要 な
作業 面 積─ ロボ ッ ト 6 畦狭 畦用 短 紙筒 移 植機 およ び 高効 率大 型 6 畦 狭畦 収穫 機 を対 象
に─ . 農研 機構 研 究報 告 3: 9-17.
Garrido-Oter, R., Nakano, R. T., Dombrowski, N., Ma, K. W., Team, T. A., McHardy A.
C., et al. (2018) Modular traits of the Rhizobiales root microbiota and their
evolutionary relationship with symbiotic rhizobia. Cell Host Microbe 24: 155–167.
Glick, B. R. (2005) Modulation of plant ethylene levels by the bacterial enzyme ACC
deaminase. FEMS Microbiol 251.1: 1-7.
Gupta, S., Meena, M. K., and Datta, S. (2014) Isolation, characterization of plant
growth promoting bacteria from the plant Chlorophytum borivilianum and in-vitro
screening for activity of nitrogen fixation, phosphate solubilization and IAA
110
production. Int J Curr Microbiol Appl Sci 3: 1082–1090.
Hattori, T., and Hattori, R. (2000) The plate count method. An attempt to delineate
the bacterial life in the microhabitat of soil. Soil Biol Biochem 10: 271-302.
Hattori, T., Mitsui, H., Haga, H., Wakao, N., Shikano, S., Gorlach, K., et al . (1997)
Advances in soil microbial ecology and the biodiversity. Antonie van Leeuwenhoek
72: 21-28.
Hara
S,
Matsuda
M,
and
Minamisawa
K.
(2019)
Growth
stage-dependent
bacterial
communities in soybean plant tissues: Methylorubrum transiently dominated in the
flowering stage of soybean shoot. Microbes Environ 34: 446–450.
Harbison, A. B., Carson, M. A., Lamit, L. J., Basiliko, N., and Bräuer, S.L. (2016)
A novel isolate and widespread abundance of the candidate alphaproteobacterial
order ( Ellin 329 ), in southern Appalachian peatlands. FEMS Microbiol Lett 363:
fnw151.
平石 明 . (2016) 環 境微 生 物の 培養 性 とそ の 生態 学的 意 義 . 日 本微 生 物資 源 学会 誌 32.1: 111.
北海 道 農政 部. (2011) 北 海道 の てん 菜 生産 の現 状に つ いて . 特 産 種苗 12: 6-8.
北海 道 農産 協会 . (2021) てん 菜 糖業 年鑑 2021 年版 . 北海 道農 産 協会 : 137-245.
北海 道 立十 勝農 業 試験 場 . (2004) て ん 菜直 播栽 培マ ニ ュア ル 2004. 北海 道て ん 菜協 会
Houlden, A., Timms-Wilson, T. M., Day, M. J., and Bailey, M. J. (2008) Influence of
plant developmental stage on microbial community structure and activity in the
rhizosphere of three field crops. FEMS Microbiol Ecol 65: 193–201.
Hudz, S. O., and Skivka, L. M. (2021) Formation of the eubacterial complex in the
ryosphere of sugar beet ( Beta vulgaris ) under different fertilization systems.
Biotechnol Acta 14: 81–86.
池田 成 志 . (2016) 土 壌 微生 物が 創 る共 生 の世 界 ―そ の 先端 的研 究 事例 と 農業 への 応 用的 研 究
展開 5. 作 物圏 共 生微 生 物の 生態 研 究の 現 状と 農業・食品 産業 へ の応 用 の可 能性 . 日本 土
壌肥 料 学雑 誌 87.5: 373-382.
Ikeda, S., Kaneko, T., Okubo, T., Rallos, L. E., Eda, S., Mitsui, H., et al . (2009)
Development of a bacterial cell enrichment method and its application to the
community analysis in soybean stems. Microb Ecol 58: 703–714.
111
Ikeda, S., Suzuki, K., Kawahara, M., Noshiro, M., and Takahashi, N. (2014) An
assessment
of
urea-formaldehyde
fertilizer
on
the
diversity
of
bacterial
communities in onion and sugar beet. Microbes Environ 29.2: 231-234.
Ikeda, S., Watanabe, K., Minamisawa, K., and Ytow, N. (2004) Evaluati on of soil DNA
from arable land in Japan using a modified direct -extraction method. Microbes
Environ 19: 301–309.
池谷 聡 . (2019) 近 年 のテ ンサ イ 品種 に おけ る直 播栽 培 適性 につ い ての 考 察. て ん 菜研 究会 報
60: 28-31.
İnceoğlu, Ö., Salles, J. F., van Overbeek, L., and van Elsas, J. D. (2010) Effects
of plant genotype
and growth
stage on
the
betaproteobacterial
communities
associated with different potato cultivars in two fields. Appl Environ Microbiol
76.11: 3675-3684.
Innerebner, G., Knief, C., and Vorholt, J. A. (2011) Protection of Arabidopsis
thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in
a controlled model system. Appl Environ Microbiol 77.10: 3202-3210.
Ishizawa, H., Kuroda, M., Morikawa, M., and Ike, M. (2017) Differential oxidative
and
antioxidative
response
of
duckweed
Lemna
minor
toward
plant
growth
promoting/inhibiting bacteria. Plant Physiol Biochem 118: 667-673.
Janvier, C., Villeneuve, F., Alabouvette, C., Edel -Hermann, V., Mateille, T., and
Steinberg, C. (2007) Soil health through soil disease suppression: which strategy
from descriptors to indicators? Soil Biol Biochem 39.1: 1-23.
Jou, Y. T., Tarigan, E. J., Prayogo, C., Kobua, C. K., Weng, Y. T., and Wang, Y. M.
(2022) Effects of Sphingobium yanoikuyae SJTF8 on rice (Oryza sativa ) seed
germination and root development. Agriculture 12.11: 1890.
Kemp, P. F., and Aller, J. Y. (2004) Bacterial diversity in aquatic and other
environments: what 16S rDNA libraries can tell us. FEMS Microbiol Ecol 47: 161–
177.
Kertesz, M. A., Fellows, E., and Schmalenberger, A. (2007) Rhizobacteria and plant
sulfur supply. Adv Appl Microbiol 62: 235-268.
Khorassani, R., Hettwer, U., Ratzinger, A., Steingrobe, B., Karlovsky, P., and
112
Claassen, N. (2011) Citramalic acid and salicylic acid in sugar beet root exudates
solubilize soil phosphorus. BMC Plant Biol 11.1: 1-8.
Kim, S. J., Ahn, J. H., Weon, H. Y., Hong, S. B., Seok, S. J., Kim, J. S., and Kwon,
S. W. (2015) Niastella gongjuensis sp. nov., isolated from greenhouse soil. Int
J Syst Evol Microbiol 65: 3115–3118.
Kloepper, J. W., Leong, J., Teintze, M., and Schroth, M. N . (1980) Enhanced plant
growth by siderophores produced by plant growth -promoting rhizobacteria. Nature
286: 885–886.
小谷 野 仁 (2012) α多 様 性の 測定 と 確率 文 字列 の理 論 . 数 理統 計 60.2: 26-278.
Kumar, P., Dubey, R. C., and Maheshwari, D. K. (2012) Bacillus strains isolated from
rhizosphere showed plant growth promoting and antagonistic activity against
phytopathogens. Microbiol Res 167: 493–499.
Kusstatscher, P., Cernava, T., Harms, K., Maier, J., Eigner, H., Berg, G., and Zachow,
C. (2019) Disease incidence in sugar beet fields is correlated with microbial
diversity and distinct biological markers. Phytobiomes J 3.1: 22-30.
Li, F., Chen, L., Zhang, J., Yin, J., and Huang, S. (2017) Bacterial community
structure after long-term organic and inorganic fertilization reveals important
associations between soil nutrients and specific taxa involved in nutrient
transformations. Front Microbiol 8; 187.
Lilley, A. K., Fry, J. C., Bailey, M. J., and Day, M. J. (1996) Comparison of aerobic
heterotrophic taxa isolated from four root domains of mature sugar beet (Beta
vulgaris ). FEMS Microbiol 21.3: 231-242.
Lozupone, C., Hamady, M., and Kni ght, R. (2006) UniFrac–an online tool for comparing
microbial community diversity in a phylogenetic context. BMC Bioinf 7: 371.
Lugtenberg, B., and Kamilova, F. (2009) Plant-growth-promoting rhizobacteria. Annu
Rev Microbiol 63: 541–556.
Luo, D., Langendries, S., Mendez, S. G., De Ryck, J., Liu, D., Beirinckx, S., et al .
(2019) Plant growth promotion driven by a novel Caulobacter strain. MPMI 32.9:
1162-1174.
Luo, Y., Wang, F., Huang, Y., Zhou, M., Gao, J., Yan, T., Sheng, H., and An, L. (2019)
113
Sphingomonas sp. Cra20 increases plant growth rate and alters rhizosphere
microbial community structure of Arabidopsis thaliana under drought stress. Front
Microbiol 10: 1221.
Magoc, T., and Salzberg, S. L. (2011) FLASH: fast length adjustment of short reads
to improve genome assemblies. Bioinformatics 27: 2957–2963.
Mastný, J., Bárta, J., Kaštovská, E., and Picek, T. (2020) Root exudate input
stimulates
peatland
recalcitrant
DOC
decomposition
by
r -strategic
taxa
of
Gammaproteobacteria and Bacteroidetes .
Masuda, S., Bao, Z., Okubo, T., Sasaki, K., Ikeda, S., Shinoda, R., et al . (2016)
Sulfur fertilization changes t he community structure of rice root -, and soilassociated bacteria. Microbes Environ 31: 70–75.
増岡 弘 晃、 高安 伶 奈、 木 口悠 也、 関 家紗 愛 、須 田亙 . (2022) 腸 内マ イ クロ バイ オ ーム 解 析の
最新 手 法. 腸内 細 菌学 雑 誌 36.3: 149-158.
Medina, D., Walke, J. B., Gajewski, Z., Becker, M. H., Swartwout, M. C., and Belden,
L. K. (2017) Culture media and individual hosts affect the recovery of culturable
bacterial diversity from amphibian skin. Front Microbiol 8: 1574.
Meena, K. K., Bitla, U. M., Sorty, A. M. , Singh, D. P., Gupta, V. K., Wakchaure, G.
C., and Kumar, S. (2020) Mitigation of salinity stress in wheat seedlings due to
the application of phytohormone-rich culture filtrate extract of methylotrophic
actinobacterium Nocardioides sp. NIMMe6. Front Microbiol 11: 2091.
Mendes, R., Kruijt, M., De Bruijn, I., Dekkers, E., van der Voort, M., Schneider,
J.H.,
et
al.
(2011)
Deciphering
the
rhizosphere
microbiome
for
disease -
suppressive bacteria. Science 332: 1097–1100.
Menéndez, E., Pérez-Yépez, J., Hernández, M., Rodríguez-Pérez, A., Velázquez, E., and
León-Barrios, M. (2020) Plant growth promotion abilities of phylogenetically
diverse Mesorhizobium strains: effect in the root colonization and development
of tomato seedlings. Microorganisms 8.3: 412.
Minami, T., Anda, M., Mitsui, H., Sugawara, M., Kaneko, T., Sato, S., et al. (2016)
Metagenomic analysis revealed methylamine and ureide utilization of soybean associated Methylobacterium . Microbes Environ 31: 268–278.
114
Mitsui, H., Gorlach, K., Lee, H. J., Hattori, R., and Hattori, T. (1997) Incubation
time and media requirements of culturable bacteria from different phylogenetic
groups. J Microbiol Methods 30.2: 103-110.
Mitsui, H., and Hattori, T. (1997) Bacterial collections for studying soil bacterial
community. NEWSL ETTER9 6.
内藤 繁 男、 神沢 克 一、 杉 本利 哉 . (1980) テ ンサ イの 紙 筒移 植と 根 腐病 の 発生 との 関 係 . て ん
菜研 究 会報 22: 18-24.
Nakamura, Y., Ishibashi, M., Kamitani, Y. and Tsurumaru, H. (2020) Microbial community
analysis of digested liquids exhibiting different methane production potential
in methane fermentation of swine feces. Appl Biochem Biotechnol 191: 1140–1154.
Natsagdorj, O., Sakamoto, H., Santiago, D. M. O., Santiago, C. D., Orikasa, Y.,
Okazaki, K., et al. (2019) Variovorax sp. has an optimum cell density to fully
function as a plant growth promoter. Microorganisms 7(3), 82.
Oleńska, E., Małek, W., Wójcik, M., Swiecicka, I., Thijs, S., and Vangronsveld, J.
(2020). Beneficial features of plant growth-promoting rhizobacteria for improving
plant growth and health in challenging conditions: A methodical review. Sci Total
Environ 743: 140682.
Okazaki, K., Iino, T., Kuroda, Y., Taguchi, K., Takahashi, H., Ohwada, T., et al.
(2014) An assessment of the diversity of culturable bacteria from main root of
sugar beet. Microbes Environ 29: 220–223.
Okazaki, K., Tsurumaru, H., Hashimoto, M., Takahashi, H., Okubo, T., Ohwada, T., et
al. (2021) Community analysis-based screening of plant growth-promoting bacteria
for sugar beet. Microbes Environ 36: ME20137.
Okubo, T., Ikeda, S., Kaneko, T., Eda, S., Mitsui, H., Sato, S., et al . (2009)
Nodulation-dependent communities of culturable bacterial endophytes from stems
of field-grown soybeans. Microbes Environ 24.3: 253-258.
Okubo, T., Ikeda, S., Sasaki, K., Ohshima, K., Hattori, M., Sato, T., et al. (2014)
Phylogeny and functions of bacterial communities associated with field-grown rice
shoots. Microbes Environ 29: 329–332.
Okubo, T., Ikeda, S., Yamashita, A., Terasawa, K., and Minamisawa, K. (2012)
115
Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of
plant-associated bacteria. Microbes Environ 27.2: 204-208.
大久 保 卓、 池田 成 志、 南 澤究 . (2016) 植物 共生 細菌 群 集を 利用 し た持 続 的農 業 . 土と 微生 物
70.1: 10-16.
O’Sullivan, D.J., and O’Gara, F. (1992) Traits of fluorescent Pseudomonas spp.
involved in suppression of plant root pathogens. Microbiol Rev 56: 662–67.
Page, R. D. (1996) Tree View: An application to display phylogenetic trees on personal
computers. Bioinformatics 12: 357–358.
Park, Y. G., Mun, B. G., Kang, S. M., Hussain, A. , Shahzad, R., Seo, C. W., et al.
(2017) Bacillus aryabhattai SRB02 tolerates oxidative and nitrosative stress and
promotes the growth of soybean by modulating the production of phytohormones.
PLoS One 12: e0173203.
Postma, J., and Schilder, M. T. (2015) Enhancement of soil suppressiveness against
Rhizoctonia solani in sugar beet by organic amendments. Appl Soil Ecol 94: 7279.
Quecine, M. C., Araújo, W. L., Rossetto, P. B., Ferreira, A., Tsui, S., Lacava, P.
T., et al. (2012) Sugarcane growth promotion by the endophytic bacterium Pantoea
agglomerans 33.1. Appl Environ Microbiol 78: 7511–7518.
Ramos, A. C., Melo, J., de Souza, S. B., Bertolazi, A. A., Silva, R. A., Rodrigues,
W. P., et al. (2020) Inoculation with the endophytic bacterium Herbaspirillum
seropedicae promotes growth, nutrient uptake and photosynthetic efficiency in
rice. Planta 252: 1-8.
Reasoner, D. J., and Geldreich, E. (1985) A new medium for the enumeration and
subculture of bacteria from potable water. Appl Environ Microbiol 49.1: 1-7.
Rilling, J. I., Acuña, J. J., Nannipieri, P., Cassan, F., Maruyama, F., and Jorquera,
M. A. (2019) Current opinion and perspectives on the methods for tracking and
monitoring plant growth‒promoting bacteria. Soil Biol Biochem 130: 205-219.
Saitou, N., and Nei, M. (1987) The neighbor -joining method: a new method for
reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425.
Sakuma, F., Maeda, M., Takahashi, M., Hashizume, K., and Kondo, N. (2011) Suppression
116
of common scab of potato caused by Streptomyces turgidiscabies using lopsided
oat green manure. Plant Dis 95: 1124–1130.
Santiago, C.D., Yagi, S., Ijima, M., Nashimoto, T., Sawada, M., Ikeda, S., et al .
(2017). Bacterial compatibility in combined inoculations enhances the growth of
potato seedlings. Microbes Environ 32: 14-17.
Schmalenberger, A., Hodge, S., Bryant, A., Hawkesford, M. J., Singh, B. K., and
Kertesz, M. A. (2008) The role of Variovorax and other Comamonadaceae in sulfur
transformations by microbial wheat rhizosphere communities exposed to different
sulfur fertilization regimes. Environ 10.6: 1486-1500.
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister,
E. B., et al. (2009) Introducing mothur: open-source, platform-independent,
community-supported software for describing and comparing microbial communities.
Appl Environ Microbiol 75: 7537–7541.
Singh, B., and Satyanarayana, T. (2011) Microbial phytases in phosphorus acquisition
and plant growth promotion. Physiol Mol Biol Plants 17: 93-103.
Shi, S., Nuccio, E., Herman, D. J., Rijkers, R., Estera, K., Li, J., et al . (2015)
Successional trajectories of rhizosphere bacterial communities over consecutive
seasons. MBio 6.4 10-1128.
Shi, Y., Lou, K., and Li, C. (2009) Promotion of plant growth by phytohormone producing endophytic microbes of sugar beet. Biol Fertil Soils 45: 645–653.
Shi, Y., Lou, K., and Li, C. (2010) Growth and photosynthetic efficiency promotion
of sugar beet ( Beta vulgaris L.) by endophytic bacteria. Photosynth Res 105: 5–
13.
Shi, Y., Yang, H., Zhang, T., Sun, J., and Lou, K. (2014) Illumina -based analysis of
endophytic bacterial diversity and space -time dynamics in sugar beet on the north
slope of Tianshan mountain. Appl Microbiol Biotechnol 98: 6375–6385.
Smalla, K., Wieland, G., Buchner, A., Zock, A., Parzy, J., Kaiser, S., Roskot, N.,
Heuer, H., and Berg, G. (2001) Bulk and rhizosphere soil bacterial communities
studied by denaturing gradient gel electrophoresis: plant -dependent enrichment
and seasonal shifts revealed. Appl Environ Microbiol 67.10: 4742-4751.
117
Someya,
N.,
Kobayashi,
Y.
O.,
Tsuda,
S.,
and
Ikeda,
S.
(2013)
Molecular
characterization of the bacterial community in a potato phytosphere. Microbes
Environ 28: 295–305.
Tanaka, D., Isobe, J., Watahiki, M., Nagai, Y., Katsukawa, C., Kawahara, R., et. al .
(2008) Genetic features of clinical isolates of Streptococcus dysgalactiae subsp.
equisimilis possessing Lancefield's group A antigen. J Clin Microbiol 46.4: 15261529.
Timmusk, S., Behers, L., Muthoni, J., Muraya, A., and Aronsson, A. C. (2017)
Perspectives and challenges of microbial application for crop improvement. Front
Plant Sci 8: 49.
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the
sensitivity of progressive multiple sequence alignment through sequence weighting,
position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:
4673–4680.
辻博 之 . (2018) 北 海 道畑 作の 大 規模 化 にお ける 課題 と 今後 の展 望 . 農 作 業研 究 53: 3-13.
鶴丸 博 人、 橋本 萌 、池 田 成志 、南 澤 究. (2013) 植物 生 育促 進細 菌 の研 究 動向 . 日 本土 壌肥 料
学雑 誌 84.5: 418-423.
Tsurumaru, H., Okubo, T., Okazaki, K., Hashimoto, M., Kakizaki, K., Hanzawa, E., et
al . (2015) Metagenomic analysis of the bacterial community associated with the
taproot of sugar beet. Microbes Environ 30: 63–69.
内野 浩 克、渡辺 英 樹 .( 1998)テン サ イ黒 根 病の 発 生推 移 と薬 剤防 除 適期 . てん 菜研 究 会報 40:
85-91.
Unno, Y., Shinano, T., Minamisawa, K., and Ikeda, S. (2015) Bacterial community shifts
associated
with
high
abundance
of
Rhizobium
spp.
in
potato
roots
under
macronutrient-deficient conditions. Soil Biol Biochem 80: 232–236.
van der Voort, M., Kempenaar, M., van Driel, M., Raaijmakers , J. M., and Mendes, R.
(2016) Impact of soil heat on reassembly of bacterial communities in the
rhizosphere microbiome and plant disease suppression. Ecol Lett 19.4: 375-382.
Vendan, R. T., Yu, Y. J., Lee, S. H., and Rhee, Y. H. (2010) Diversity of endoph ytic
bacteria in ginseng and their potential for plant growth promotion. J Microbiol
118
48: 559–565.
Verma, J. P., Yadav, J., Tiwari, K. N., and Kumar, A. (2013) Effect of indigenous
Mesorhizobium spp. and plant growth promoting rhizobacteria on yields and
nutrients uptake of chickpea ( Cicer arietinum L.) under sustainable agriculture.
Ecol Eng 51: 282-286.
Vurukonda, S. S. K. P., Vardharajula, S., Shrivastava, M., and SkZ , A. (2016)
Enhancement of drought stress tolerance in crops by plant growth promoting
rhizobacteria. Microbiol Res 184: 13–24.
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007) Naive Bayesian
classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Appl Environ Microbiol 73: 5261–5267.
Wawrik, B., Kerkhof, L., Zylstra, G. J., and Kukor, J. J. (2005) Identification of
unique type II polyketide synthase genes in soil. Appl Environ Microbiol 71.5:
2232-2238.
Weon, H. Y., Kim, B. Y., Yoo, S. H., Lee, S. Y., Kwon, S. W., Go, S. J., and
Stackebrandt, E. (2006) Niastella koreensis gen. nov., sp. nov. and Niastella
yeongjuensis sp. nov., novel members of the phylum Bacteroidetes , isolated from
soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56: 1777–1782.
Wolfgang, A., Temme, N., Tilcher, R., and Berg, G. (2023) Understanding the sugar
beet holobiont for sustainable agriculture. Front Microbiol 14: 1151052.
Wolfgang, A., Zachow, C., Müller, H., Grand, A., Temme, N., Tilcher, R., and Berg,
G. (2020) Understanding the impact of cultivar, seed origin, and substrate on
bacterial diversity of the sugar beet rhizosphere and suppression of soil -borne
pathogens. Front. Plant Sci 11: 560869.
Wu, G. D., Lewis, J. D., Hoffmann, C., Chen, Y. Y., Knight, R., Bittinger, K., et al .
(2010)
Sampling
and
pyrosequencing
methods
for
characterizing
bacterial
communities in the human gut using 16S sequence tags. BMC microbiol 10: 206.
Yeoh, Y. K., Paungfoo‐Lonhienne, C., Dennis, P. G., Robinson, N., Ragan, M. A.,
Schmidt, S., et al. (2016) The core root microbiome of sugarcanes cultivated
under varying nitrogen fertilizer application. Environ Microbiol 18: 1338–1351.
119
Yin, C., Casa Vargas, J. M., Schlatter, D. C., Hagerty, C. H., Hulbert, S. H., and
Paulitz, T. C. (2021) Rhizosphere community selection reveals bacteria associated
with reduced root disease. Microbiome 9: 86.
Yin, C., Hulbert, S. H., Schroeder, K. L., Mavrodi, O., Mavrodi, D., Dhingra, A., et
al . (2013) Role of bacterial communities in the natural suppression of Rhizoctonia
solani bare patch disease of wheat ( Triticum aestivum L.). Appl Environ Microbiol
79: 7428–7438.
吉村 康 弘、 柳沢 朗 、大 槌 勝彦 . (1991) 苗 質の 違 いが テ ンサ イの 生 育・ 収 量に 及ぼ す 影響 に つ
いて . 育種 ・作 物 学会 北 海道 談話 会 会報 31: 15.
Zachow, C., Jahanshah, G., de Bruijn, I., Song, C., Ianni, F., Pataj, Z., et al.
(2015) The novel lipopeptide poaeamide of the endophyte Pseudomonas poae RE* 11-14 is involved in pathogen suppression and root colonization. MPMI 28.7: 800810.
Zachow, C., Müller, H., Tilcher, R., and Berg, G. (2014) Differences between the
rhizosphere microbiome of Beta vulgaris ssp. maritima—ancestor of all beet crops—
and modern sugar beets. Front Microbiol 5: 415.
Zhang, K., Wang, Y., Tang, Y., Dai, J., Zhang, L., An, H., et al. (2010) Niastella
populi sp. nov., isolated from soil of Euphrates poplar ( Populus euphratica )
forest, and emended description of the genus Niastella . Int J Syst Evol Mi ...