Adachi Y, Itoh K, Yamada T, Cerveny KL, Suzuki TL, Macdonald P, Frohman MA, Ramachandran R, Iijima M & Sesaki H (2016) Coincident Phosphatidic Acid Interaction Restrains Drp1 in Mitochondrial Division. Mol Cell 63: 1034–1043
Akagi T, Sasai K & Hanafusa H (2003) Refractory nature of normal human diploid fibroblasts with respect to oncogene-mediated transformation. Proc Natl Acad Sci 100: 13567–13572
Anderson AJ, Jackson TD, Stroud DA & Stojanovski D (2019) Mitochondria—hubs for regulating cellular biochemistry: emerging concepts and networks. Open Biol 9: 190126
Antonicka H, Lin Z-Y, Janer A, Aaltonen MJ, Weraarpachai W, Gingras A-C & Shoubridge EA (2020) A High-Density Human Mitochondrial Proximity Interaction Network. Cell Metab 32: 479-497.e9
Brobeil A, Dietel E, Gattenlöhner S & Wimmer M (2017) Orchestrating cellular signaling pathways— the cellular “conductor” protein tyrosine phosphatase interacting protein 51 (PTPIP51). Cell Tissue Res 368: 411–423
Cabukusta B, Berlin I, van Elsland DM, Forkink I, Spits M, de Jong AWM, Akkermans JJLL, Wijdeven RHM, Janssen GMC, van Veelen PA, et al (2020) Human VAPome Analysis Reveals MOSPD1 and MOSPD3 as Membrane Contact Site Proteins Interacting with FFAT-Related FFNT Motifs. Cell Rep 33: 108475
Chapman-Smith A & Cronan Jr JE (1999) Molecular Biology of Biotin Attachment to Proteins. J Nutr 129: 477S-484S
Cho KF, Branon TC, Rajeev S, Svinkina T, Udeshi ND, Thoudam T, Kwak C, Rhee H-W, Lee I-K, Carr SA, et al (2020) Split-TurboID enables contact-dependent proximity labeling in cells. Proc Natl Acad Sci 117: 12143–12154
Choi S-Y, Huang P, Jenkins GM, Chan DC, Schiller J & Frohman MA (2006) A common lipid links Mfn-mediated mitochondrial fusion and SNARE-regulated exocytosis. Nat Cell Biol 8: 1255– 1262
Concordet J-P & Haeussler M (2018) CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens. Nucleic Acids Res 46: W242–W245
Csordás G, Weaver D & Hajnóczky G (2018) Endoplasmic Reticulum–Mitochondrial Contactology: Structure and Signaling Functions. Trends Cell Biol 28: 523–540
Desai R, East DA, Hardy L, Faccenda D, Rigon M, Crosby J, Alvarez MS, Singh A, Mainenti M, Hussey LK, et al (2020) Mitochondria form contact sites with the nucleus to couple prosurvival retrograde response. Sci Adv 6: 1–16
Filadi R, Leal NS, Schreiner B, Rossi A, Dentoni G, Pinho CM, Wiehager B, Cieri D, Calì T, Pizzo P, et al (2018) TOM70 Sustains Cell Bioenergetics by Promoting IP3R3-Mediated ER to Mitochondria Ca2+ Transfer. Curr Biol 28: 369-382.e6
Filadi R, Theurey P & Pizzo P (2017) The endoplasmic reticulum-mitochondria coupling in health and disease: Molecules, functions and significance. Cell Calcium 62: 1–15
Galmes R, Houcine A, Vliet AR, Agostinis P, Jackson CL & Giordano F (2016) ORP5/ORP8 localize to endoplasmic reticulum–mitochondria contacts and are involved in mitochondrial function. EMBO Rep 17: 800–810
Ge DT, Wang W, Tipping C, Gainetdinov I, Weng Z & Zamore PD (2019) The RNA-Binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria. Mol Cell 74: 982-995.e6
Gomez-Suaga P, Paillusson S, Stoica R, Noble W, Hanger DP & Miller CCJ (2017) The ER- Mitochondria Tethering Complex VAPB-PTPIP51 Regulates Autophagy. Curr Biol 27: 371–385
Han S, Zhao F, Hsia J, Ma X, Liu Y, Torres S, Fujioka H & Zhu X (2021) The role of Mfn2 in the structure and function of endoplasmic reticulum-mitochondrial tethering in vivo. J Cell Sci 134
Holden P & Horton WA (2009) Crude subcellular fractionation of cultured mammalian cell lines. BMC Res Notes 2: 243
Horibata Y, Ando H, Satou M, Shimizu H, Mitsuhashi S, Shimizu Y, Itoh M & Sugimoto H (2017) Identification of the N-terminal transmembrane domain of StarD7 and its importance for mitochondrial outer membrane localization and phosphatidylcholine transfer. Sci Rep 7: 8793
Horner SM, Liu HM, Park HS, Briley J & Gale M (2011) Mitochondrial-associated endoplasmic reticulum membranes (MAM) form innate immune synapses and are targeted by hepatitis C virus. Proc Natl Acad Sci 108: 14590–14595
Hung V, Udeshi ND, Lam SS, Loh KH, Cox KJ, Pedram K, Carr SA & Ting AY (2016) Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2. Nat Protoc 11: 456–475
Hwang J & Espenshade PJ (2016) Proximity-dependent biotin labelling in yeast using the engineered ascorbate peroxidase APEX2. Biochem J 473: 2463–2469 Järvinen E, Ismail K, Muniandy M, Bogl LH, Heinonen S, Tummers M, Miettinen S, Kaprio J, Rissanen A, Ollikainen M, et al (2016) Biotin-dependent functions in adiposity: a study of monozygotic twin pairs. Int J Obes 40: 788–795
Kanda Y (2013) Investigation of the freely available easy-to-use software ‘EZR’ for medical statistics. Bone Marrow Transplant 48: 452–458
Kawashima Y, Watanabe E, Umeyama T, Nakajima D, Hattori M, Honda K & Ohara O (2019) Optimization of Data-Independent Acquisition Mass Spectrometry for Deep and Highly Sensitive Proteomic Analysis. Int J Mol Sci 20: 5932
Kwak C, Shin S, Park J-S, Jung M, Nhung TTM, Kang M-G, Lee C, Kwon T-H, Park SK, Mun JY, et al (2020) Contact-ID, a tool for profiling organelle contact sites, reveals regulatory proteins of mitochondrial-associated membrane formation. Proc Natl Acad Sci 117: 12109–12120
Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK & Ting AY (2015) Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat Methods 12: 51–54
Lim KL, Chew KCM, Tan JMM, Wang C, Chung KKK, Zhang Y, Tanaka Y, Smith W, Engelender S, Ross CA, et al (2005) Parkin Mediates Nonclassical, Proteasomal-Independent Ubiquitination of Synphilin-1: Implications for Lewy Body Formation. J Neurosci 25: 2002–2009
Lionaki E, Gkikas I & Tavernarakis N (2016) Differential Protein Distribution between the Nucleus and Mitochondria: Implications in Aging. Front Genet 7: 162
Lv BF, Yu CF, Chen YY, Lu Y, Guo JH, Song QS, Ma DL, Shi TP & Wang L (2006) Protein tyrosine phosphatase interacting protein 51 (PTPIP51) is a novel mitochondria protein with an N-terminal mitochondrial targeting sequence and induces apoptosis. Apoptosis 11: 1489–1501
Motohashi K (2015) A simple and efficient seamless DNA cloning method using SLiCE from Escherichia coli laboratory strains and its application to SLiP site-directed mutagenesis. BMC Biotechnol 15: 47
Muallem S, Chung WY, Jha A & Ahuja M (2017) Lipids at membrane contact sites: cell signaling and ion transport. EMBO Rep 18: 1893–1904
Nagashima S, Tábara L-C, Tilokani L, Paupe V, Anand H, Pogson JH, Zunino R, McBride HM & Prudent J (2020) Golgi-derived PI ( 4 ) P-containing vesicles drive late steps of mitochondrial division. Science (80- ) 367: 1366–1371
Nagashima S, Takeda K, Ohno N, Ishido S, Aoki M, Saitoh Y, Takada T, Tokuyama T, Sugiura A, Fukuda T, et al (2019) MITOL deletion in the brain impairs mitochondrial structure and ER tethering leading to oxidative stress. Life Sci Alliance 2: e201900308
Nagashima S, Tokuyama T, Yonashiro R, Inatome R & Yanagi S (2014) Roles of mitochondrial ubiquitin ligase MITOL/MARCH5 in mitochondrial dynamics and diseases. J Biochem 155: 273–279
Park Y-J, Oanh NTK, Heo J, Kim S-G, Lee H-S, Lee H, Lee J-H, Kang HC, Lim W, Yoo Y-S, et al (2020) Dual targeting of RIG-I and MAVS by MARCH5 mitochondria ubiquitin ligase in innate immunity. Cell Signal 67: 109520
Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA & Zhang F (2013) Genome engineering using the CRISPR-Cas9 system. Nat Protoc 8: 2281–2308
Rochin L, Monteiro-Cardoso VF, Arora A, Houcine A, Jääskeläinen E, Kivelä AM, Sauvanet C, Le Bars R, Marien E, Dehairs J, et al (2021) ORP5/8 AND MIB/MICOS LINK ER- MITOCHONDRIA AND INTRAMITOCHONDRIAL CONTACTS FOR NON-VESICULAR TRANSPORT OF PHOSPHATIDYLSERINE. bioRxiv: 695577
Saric A, Andreau K, Armand A-S, Møller IM & Petit PX (2016) Barth Syndrome: From Mitochondrial Dysfunctions Associated with Aberrant Production of Reactive Oxygen Species to Pluripotent Stem Cell Studies. Front Genet 6: 359
Scharwey M, Tatsuta T & Langer T (2013) Mitochondrial lipid transport at a glance. J Cell Sci 126: 5317–23
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, et al (2012) Fiji: an open-source platform for biological-image analysis. Nat Methods 9: 676–682
Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J & MacCoss MJ (2018) Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry. Nat Commun 9: 5128
Shiiba I, Takeda K, Nagashima S, Ito N, Tokuyama T, Yamashita S-I, Kanki T, Komatsu T, Urano Y, Fujikawa Y, et al (2021) MITOL promotes cell survival by degrading Parkin during mitophagy. EMBO Rep 22: e49097 De Stefani D, Bononi A, Romagnoli A, Messina A, De Pinto V, Pinton P & Rizzuto R (2012) VDAC1 selectively transfers apoptotic Ca2+ signals to mitochondria. Cell Death Differ 19: 267–273
Stenzinger A, Schreiner D, Pfeiffer T, Tag C, Hofer HW & Wimmer M (2006) Epidermal Growth Factor-, Transforming Growth Factor-β-, Retinoic Acid- and 1,25-Dihydroxyvitamin D3- Regulated Expression of the Novel Protein PTPIP51 in Keratinocytes. Cells Tissues Organs 184: 76–87
Stoica R, De Vos KJ, Paillusson S, Mueller S, Sancho RM, Lau K-F, Vizcay-Barrena G, Lin W-L, Xu Y-F, Lewis J, et al (2014) ER–mitochondria associations are regulated by the VAPB–PTPIP51 interaction and are disrupted by ALS/FTD-associated TDP-43. Nat Commun 5: 3996
Strobbe D, Sharma S & Campanella M (2021) Links between mitochondrial retrograde response and mitophagy in pathogenic cell signalling. Cell Mol Life Sci 78: 3767–3775
Sugiura A, Nagashima S, Tokuyama T, Amo T, Matsuki Y, Ishido S, Kudo Y, McBride HM, Fukuda T, Matsushita N, et al (2013) MITOL Regulates Endoplasmic Reticulum-Mitochondria Contacts via Mitofusin2. Mol Cell 51: 20–34
Szabadkai G, Bianchi K, Várnai P, De Stefani D, Wieckowski MR, Cavagna D, Nagy AI, Balla T & Rizzuto R (2006) Chaperone-mediated coupling of endoplasmic reticulum and mitochondrial Ca2+ channels. J Cell Biol 175: 901–11
Takeda K, Nagashima S, Shiiba I, Uda A, Tokuyama T, Ito N, Fukuda T, Matsushita N, Ishido S, Iwawaki T, et al (2019) MITOL prevents ER stress-induced apoptosis by IRE1α ubiquitylation at ER-mitochondria contact sites. EMBO J 38: e100999
Tamura Y, Sesaki H & Endo T (2014) Phospholipid Transport via Mitochondria. Traffic 15: 933–945 De Vos KJ, Mórotz GM, Stoica R, Tudor EL, Lau K-F, Ackerley S, Warley A, Shaw CE & Miller CCJ (2012) VAPB interacts with the mitochondrial protein PTPIP51 to regulate calcium homeostasis. Hum Mol Genet 21: 1299–1311
Yeo HK, Park TH, Kim HY, Jang H, Lee J, Hwang G-SG, Ryu SE, Park SH, Song HK, Ban HS, et al (2021) Phospholipid transfer function of PTPIP51 at mitochondria-associated ER membranes. EMBO Rep 22: e51323
Yonashiro R, Ishido S, Kyo S, Fukuda T, Goto E, Matsuki Y, Ohmura-Hoshino M, Sada K, Hotta H, Yamamura H, et al (2006) A novel mitochondrial ubiquitin ligase plays a critical role in mitochondrial dynamics. EMBO J 25: 3618–26
Zewe JP, Wills RC, Sangappa S, Goulden BD & Hammond GR (2018) SAC1 degrades its lipid substrate PtdIns4P in the endoplasmic reticulum to maintain a steep chemical gradient with donor membranes. Elife 7
Zhang Y, Liu X, Bai J, Tian X, Zhao X, Liu W, Duan X, Shang W, Fan H-Y & Tong C (2016) Mitoguardin Regulates Mitochondrial Fusion through MitoPLD and Is Required for Neuronal Homeostasis. Mol Cell 61: 111–124
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