[1]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
J. G. Bartlett, T. W. Chang, M. Gurwith, S. L. Gorbach, and A. B. Onderdonk, "Antibioticassociated pseudomembranous colitis due to toxin-producing clostridia," (in eng), N Engl J
Med, vol. 298, no. 10, pp. 531-4, Mar 9 1978.
A. Cassini et al., "Burden of Six Healthcare-Associated Infections on European Population
Health: Estimating Incidence-Based Disability-Adjusted Life Years through a Population
Prevalence-Based Modelling Study," (in eng), PLoS Med, vol. 13, no. 10, p. e1002150, Oct
2016.
S. S. Magill et al., "Changes in Prevalence of Health Care-Associated Infections in U.S.
Hospitals," (in eng), N Engl J Med, vol. 379, no. 18, pp. 1732-1744, Nov 1 2018.
T. V. Riley and T. Kimura, "The Epidemiology of Clostridium difficile Infection in Japan: A
Systematic Review," (in eng), Infect Dis Ther, vol. 7, no. 1, pp. 39-70, Mar 2018.
T. Planche and M. H. Wilcox, "Diagnostic pitfalls in Clostridium difficile infection," (in eng),
Infect Dis Clin North Am, vol. 29, no. 1, pp. 63-82, Mar 2015.
M. J. Crobach et al., "European Society of Clinical Microbiology and Infectious Diseases:
update of the diagnostic guidance document for Clostridium difficile infection," (in eng), Clin
Microbiol Infect, vol. 22 Suppl 4, pp. S63-81, Aug 2016.
L. C. McDonald et al., "Clinical Practice Guidelines for Clostridium difficile Infection in
Adults and Children: 2017 Update by the Infectious Diseases Society of America (IDSA) and
Society for Healthcare Epidemiology of America (SHEA)," (in eng), Clin Infect Dis, vol. 66,
no. 7, pp. e1-e48, Mar 19 2018.
C. R. Polage et al., "Overdiagnosis of Clostridium difficile Infection in the Molecular Test
Era," (in eng), JAMA Intern Med, vol. 175, no. 11, pp. 1792-801, Nov 2015.
M. I. Garvey, C. W. Bradley, M. A. C. Wilkinson, and E. Holden, "Can a toxin gene NAAT be
used to predict toxin EIA and the severity of Clostridium difficile infection?," (in eng),
Antimicrob Resist Infect Control, vol. 6, p. 127, 2017.
G. P. Carter et al., "Defining the Roles of TcdA and TcdB in Localized Gastrointestinal
Disease, Systemic Organ Damage, and the Host Response during Clostridium difficile
Infections," (in eng), mBio, vol. 6, no. 3, p. e00551, Jun 2 2015.
K. Aktories, C. Schwan, and T. Jank, "Clostridium difficile Toxin Biology," (in eng), Annu
Rev Microbiol, vol. 71, pp. 281-307, Sep 8 2017.
T. Jank, T. Giesemann, and K. Aktories, "Rho-glucosylating Clostridium difficile toxins A
and B: new insights into structure and function," (in eng), Glycobiology, vol. 17, no. 4, pp.
15r-22r, Apr 2007.
E. Chaves-Olarte, M. Weidmann, C. Eichel-Streiber, and M. Thelestam, "Toxins A and B
from Clostridium difficile differ with respect to enzymatic potencies, cellular substrate
specificities, and surface binding to cultured cells," (in eng), J Clin Invest, vol. 100, no. 7, pp.
1734-41, Oct 1 1997.
S. T. Donta, N. Sullivan, and T. D. Wilkins, "Differential effects of Clostridium difficile
toxins on tissue-cultured cells," (in eng), J Clin Microbiol, vol. 15, no. 6, pp. 1157-8, Jun
1982.
D. R. Knight, B. Elliott, B. J. Chang, T. T. Perkins, and T. V. Riley, "Diversity and Evolution
in the Genome of Clostridium difficile," (in eng), Clin Microbiol Rev, vol. 28, no. 3, pp. 72141, Jul 2015.
V. Braun, T. Hundsberger, P. Leukel, M. Sauerborn, and C. von Eichel-Streiber, "Definition
of the single integration site of the pathogenicity locus in Clostridium difficile," (in eng),
Gene, vol. 181, no. 1-2, pp. 29-38, Nov 28 1996.
G. A. Hammond and J. L. Johnson, "The toxigenic element of Clostridium difficile strain VPI
10463," (in eng), Microb Pathog, vol. 19, no. 4, pp. 203-13, Oct 1995.
70
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
N. Mani and B. Dupuy, "Regulation of toxin synthesis in Clostridium difficile by an
alternative RNA polymerase sigma factor," (in eng), Proc Natl Acad Sci U S A, vol. 98, no.
10, pp. 5844-9, May 8 2001.
K. S. Tan, B. Y. Wee, and K. P. Song, "Evidence for holin function of tcdE gene in the
pathogenicity of Clostridium difficile," (in eng), J Med Microbiol, vol. 50, no. 7, pp. 613-619,
Jul 2001.
G. P. Carter et al., "Binary toxin production in Clostridium difficile is regulated by CdtR, a
LytTR family response regulator," (in eng), J Bacteriol, vol. 189, no. 20, pp. 7290-301, Oct
2007.
M. R. Popoff, E. J. Rubin, D. M. Gill, and P. Boquet, "Actin-specific ADP-ribosyltransferase
produced by a Clostridium difficile strain," (in eng), Infect Immun, vol. 56, no. 9, pp. 2299306, Sep 1988.
L. C. McDonald et al., "An epidemic, toxin gene-variant strain of Clostridium difficile," (in
eng), N Engl J Med, vol. 353, no. 23, pp. 2433-41, Dec 8 2005.
S. Bacci, K. Molbak, M. K. Kjeldsen, and K. E. Olsen, "Binary toxin and death after
Clostridium difficile infection," (in eng), Emerg Infect Dis, vol. 17, no. 6, pp. 976-82, Jun
2011.
V. G. Loo et al., "A predominantly clonal multi-institutional outbreak of Clostridium difficileassociated diarrhea with high morbidity and mortality," (in eng), N Engl J Med, vol. 353, no.
23, pp. 2442-9, Dec 8 2005.
M. Warny et al., "Toxin production by an emerging strain of Clostridium difficile associated
with outbreaks of severe disease in North America and Europe," (in eng), Lancet, vol. 366,
no. 9491, pp. 1079-84, Sep 24-30 2005.
D. Drudy, S. Fanning, and L. Kyne, "Toxin A-negative, toxin B-positive Clostridium
difficile," (in eng), Int J Infect Dis, vol. 11, no. 1, pp. 5-10, Jan 2007.
C. Eckert et al., "Prevalence and pathogenicity of binary toxin-positive Clostridium difficile
strains that do not produce toxins A and B," (in eng), New Microbes New Infect, vol. 3, pp.
12-7, Jan 2015.
A. M. King, K. E. Mackin, and D. Lyras, "Emergence of toxin A-negative, toxin B-positive
Clostridium difficile strains: epidemiological and clinical considerations," (in eng), Future
Microbiol, vol. 10, no. 1, pp. 1-4, 2015.
C. R. Clabots et al., "Development of a rapid and efficient restriction endonuclease analysis
typing system for Clostridium difficile and correlation with other typing systems," (in eng), J
Clin Microbiol, vol. 31, no. 7, pp. 1870-5, Jul 1993.
S. L. Stubbs, J. S. Brazier, G. L. O'Neill, and B. I. Duerden, "PCR targeted to the 16S-23S
rRNA gene intergenic spacer region of Clostridium difficile and construction of a library
consisting of 116 different PCR ribotypes," (in eng), J Clin Microbiol, vol. 37, no. 2, pp. 4613, Feb 1999.
M. Kristjánsson et al., "Comparison of restriction endonuclease analysis, ribotyping, and
pulsed-field gel electrophoresis for molecular differentiation of Clostridium difficile strains,"
(in eng), J Clin Microbiol, vol. 32, no. 8, pp. 1963-9, Aug 1994.
F. Barbut, N. Mario, J. Frottier, and J. C. Petit, "Use of the arbitrary primer polymerase chain
reaction for investigating an outbreak of Clostridium difficile-associated diarrhea in AIDS
patients," (in eng), Eur J Clin Microbiol Infect Dis, vol. 12, no. 10, pp. 794-5, Oct 1993.
D. Griffiths et al., "Multilocus sequence typing of Clostridium difficile," J Clin Microbiol,
vol. 48, no. 3, pp. 770-8, Mar 2010.
M. Rupnik and S. Janezic, "An Update on Clostridium difficile Toxinotyping," (in eng), J
Clin Microbiol, vol. 54, no. 1, pp. 13-8, Jan 2016.
S. Toma, G. Lesiak, M. Magus, H. L. Lo, and M. Delmée, "Serotyping of Clostridium
difficile," (in eng), J Clin Microbiol, vol. 26, no. 3, pp. 426-8, Mar 1988.
71
[36]
[37]
[38]
[39]
[40]
[41]
[42]
[43]
[44]
[45]
[46]
[47]
[48]
[49]
[50]
[51]
[52]
[53]
S. R. Heard, B. Rasburn, R. C. Matthews, and S. Tabaqchali, "Immunoblotting to
demonstrate antigenic and immunogenic differences among nine standard strains of
Clostridium difficile," (in eng), J Clin Microbiol, vol. 24, no. 3, pp. 384-7, Sep 1986.
M. C. Maiden et al., "Multilocus sequence typing: a portable approach to the identification of
clones within populations of pathogenic microorganisms," (in eng), Proc Natl Acad Sci U S
A, vol. 95, no. 6, pp. 3140-5, Mar 17 1998.
C. W. Knetsch, T. D. Lawley, M. P. Hensgens, J. Corver, M. W. Wilcox, and E. J. Kuijper,
"Current application and future perspectives of molecular typing methods to study
Clostridium difficile infections," (in eng), Euro Surveill, vol. 18, no. 4, p. 20381, Jan 24 2013.
K. E. Dingle et al., "Clinical Clostridium difficile: clonality and pathogenicity locus
diversity," (in eng), PLoS One, vol. 6, no. 5, p. e19993, 2011.
K. E. Dingle et al., "Evolutionary history of the Clostridium difficile pathogenicity locus," (in
eng), Genome Biol Evol, vol. 6, no. 1, pp. 36-52, Jan 2014.
R. Chen et al., "Whole genome sequences of three Clade 3 Clostridium difficile strains
carrying binary toxin genes in China," (in eng), Sci Rep, vol. 7, p. 43555, Mar 6 2017.
J. Kim, Y. Kim, and H. Pai, "Clinical Characteristics and Treatment Outcomes of Clostridium
difficile Infections by PCR Ribotype 017 and 018 Strains," (in eng), PLoS One, vol. 11, no.
12, p. e0168849, 2016.
G. Ramirez-Vargas et al., "Novel Clade C-I Clostridium difficile strains escape diagnostic
tests, differ in pathogenicity potential and carry toxins on extrachromosomal elements," (in
eng), Sci Rep, vol. 8, no. 1, p. 13951, Sep 17 2018.
K. Imwattana et al., "Clostridium difficile ribotype 017 - characterization, evolution and
epidemiology of the dominant strain in Asia," (in eng), Emerg Microbes Infect, vol. 8, no. 1,
pp. 796-807, 2019.
Y. B. Chen et al., "Molecular epidemiology and antimicrobial susceptibility of Clostridium
difficile isolated from hospitals during a 4-year period in China," (in eng), J Med Microbiol,
vol. 67, no. 1, pp. 52-59, Jan 2018.
J. Kim et al., "Epidemiology of Clostridium difficile infections in a tertiary-care hospital in
Korea," (in eng), Clin Microbiol Infect, vol. 19, no. 6, pp. 521-7, Jun 2013.
Y. Luo et al., "Molecular epidemiology of Clostridium difficile in two tertiary care hospitals
in Shandong Province, China," (in eng), Infect Drug Resist, vol. 11, pp. 489-500, 2018.
R. Wang, L. Suo, H. X. Chen, L. J. Song, Y. Y. Shen, and Y. P. Luo, "Molecular epidemiology
and antimicrobial susceptibility of Clostridium difficile isolated from the Chinese People's
Liberation Army General Hospital in China," (in eng), Int J Infect Dis, vol. 67, pp. 86-91, Feb
2018.
Y. Kuwata et al., "Molecular epidemiology and antimicrobial susceptibility of Clostridium
difficile isolated from a university teaching hospital in Japan," (in eng), Eur J Clin Microbiol
Infect Dis, vol. 34, no. 4, pp. 763-72, Apr 2015.
M. Whiteley, S. P. Diggle, and E. P. Greenberg, "Progress in and promise of bacterial quorum
sensing research," (in eng), Nature, vol. 551, no. 7680, pp. 313-320, Nov 15 2017.
K. Ohtani, H. Hayashi, and T. Shimizu, "The luxS gene is involved in cell-cell signalling for
toxin production in Clostridium perfringens," (in eng), Mol Microbiol, vol. 44, no. 1, pp. 1719, Apr 2002.
V. Sperandio, C. C. Li, and J. B. Kaper, "Quorum-sensing Escherichia coli regulator A: a
regulator of the LysR family involved in the regulation of the locus of enterocyte effacement
pathogenicity island in enterohemorrhagic E. coli," (in eng), Infect Immun, vol. 70, no. 6, pp.
3085-93, Jun 2002.
J. Zhu, M. B. Miller, R. E. Vance, M. Dziejman, B. L. Bassler, and J. J. Mekalanos,
"Quorum-sensing regulators control virulence gene expression in Vibrio cholerae," (in eng),
Proc Natl Acad Sci U S A, vol. 99, no. 5, pp. 3129-34, Mar 5 2002.
72
[54]
[55]
[56]
[57]
[58]
[59]
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
[68]
[69]
[70]
A. Wuster and M. M. Babu, "Conservation and evolutionary dynamics of the agr cell-to-cell
communication system across firmicutes," (in eng), J Bacteriol, vol. 190, no. 2, pp. 743-6,
Jan 2008.
X. Qin, K. V. Singh, G. M. Weinstock, and B. E. Murray, "Effects of Enterococcus faecalis fsr
genes on production of gelatinase and a serine protease and virulence," (in eng), Infect
Immun, vol. 68, no. 5, pp. 2579-86, May 2000.
N. Autret, C. Raynaud, I. Dubail, P. Berche, and A. Charbit, "Identification of the agr locus of
Listeria monocytogenes: role in bacterial virulence," (in eng), Infect Immun, vol. 71, no. 8,
pp. 4463-71, Aug 2003.
L. Tan, S. R. Li, B. Jiang, X. M. Hu, and S. Li, "Therapeutic Targeting of the Staphylococcus
aureus Accessory Gene Regulator (agr) System," (in eng), Front Microbiol, vol. 9, p. 55,
2018.
P. Dufour et al., "High genetic variability of the agr locus in Staphylococcus species," (in
eng), J Bacteriol, vol. 184, no. 4, pp. 1180-6, Feb 2002.
S. Jarraud et al., "Exfoliatin-producing strains define a fourth agr specificity group in
Staphylococcus aureus," (in eng), J Bacteriol, vol. 182, no. 22, pp. 6517-22, Nov 2000.
G. Ji, R. Beavis, and R. P. Novick, "Bacterial interference caused by autoinducing peptide
variants," (in eng), Science, vol. 276, no. 5321, pp. 2027-30, Jun 27 1997.
Y. Tal-Gan, M. Ivancic, G. Cornilescu, and H. E. Blackwell, "Characterization of structural
elements in native autoinducing peptides and non-native analogues that permit the differential
modulation of AgrC-type quorum sensing receptors in Staphylococcus aureus," (in eng), Org
Biomol Chem, vol. 14, no. 1, pp. 113-21, Jan 7 2016.
G. L. Marsden, I. J. Davis, V. J. Wright, M. Sebaihia, E. J. Kuijper, and N. P. Minton, "Array
comparative hybridisation reveals a high degree of similarity between UK and European
clinical isolates of hypervirulent Clostridium difficile," (in eng), BMC Genomics, vol. 11, p.
389, Jun 21 2010.
M. J. Martin et al., "The agr locus regulates virulence and colonization genes in Clostridium
difficile 027," (in eng), J Bacteriol, vol. 195, no. 16, pp. 3672-81, Aug 2013.
C. Darkoh, C. Odo, and H. L. DuPont, "Accessory Gene Regulator-1 Locus Is Essential for
Virulence and Pathogenesis of Clostridium difficile," (in eng), MBio, vol. 7, no. 4, Aug 16
2016.
C. Darkoh, H. L. DuPont, S. J. Norris, and H. B. Kaplan, "Toxin synthesis by Clostridium
difficile is regulated through quorum signaling," (in eng), MBio, vol. 6, no. 2, p. e02569, Feb
24 2015.
E. R. Dubberke et al., "Clostridium difficile colonization among patients with clinically
significant diarrhea and no identifiable cause of diarrhea," (in eng), Infect Control Hosp
Epidemiol, vol. 39, no. 11, pp. 1330-1333, Nov 2018.
S. D. Goldenberg and G. L. French, "Lack of association of tcdC type and binary toxin status
with disease severity and outcome in toxigenic Clostridium difficile," (in eng), J Infect, vol.
62, no. 5, pp. 355-62, May 2011.
S. Persson, M. Torpdahl, and K. E. Olsen, "New multiplex PCR method for the detection of
Clostridium difficile toxin A (tcdA) and toxin B (tcdB) and the binary toxin (cdtA/cdtB)
genes applied to a Danish strain collection," Clin Microbiol Infect, vol. 14, no. 11, pp. 105764, Nov 2008.
N. Kato et al., "Identification of toxigenic Clostridium difficile by the polymerase chain
reaction," (in eng), J Clin Microbiol, vol. 29, no. 1, pp. 33-7, Jan 1991.
Y. Iwashima et al., "A retrospective study of the epidemiology of Clostridium difficile
infection at a University Hospital in Japan: genotypic features of the isolates and clinical
characteristics of the patients," (in eng), J Infect Chemother, vol. 16, no. 5, pp. 329-33, Oct
2010.
73
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
H. Kato et al., "Analysis of Clostridium difficile isolates from nosocomial outbreaks at three
hospitals in diverse areas of Japan," (in eng), J Clin Microbiol, vol. 39, no. 4, pp. 1391-5, Apr
2001.
E. Sawabe et al., "Molecular analysis of Clostridium difficile at a university teaching hospital
in Japan: a shift in the predominant type over a five-year period," (in eng), Eur J Clin
Microbiol Infect Dis, vol. 26, no. 10, pp. 695-703, Oct 2007.
B. Wang, Z. Lv, P. Zhang, and J. Su, "Molecular epidemiology and antimicrobial
susceptibility of human Clostridium difficile isolates from a single institution in Northern
China," (in eng), Medicine (Baltimore), vol. 97, no. 25, p. e11219, Jun 2018.
M. J. Alfa et al., "Characterization of a toxin A-negative, toxin B-positive strain of
Clostridium difficile responsible for a nosocomial outbreak of Clostridium difficileassociated diarrhea," (in eng), J Clin Microbiol, vol. 38, no. 7, pp. 2706-14, Jul 2000.
D. Drudy, N. Harnedy, S. Fanning, M. Hannan, and L. Kyne, "Emergence and control of
fluoroquinolone-resistant, toxin A-negative, toxin B-positive Clostridium difficile," (in eng),
Infect Control Hosp Epidemiol, vol. 28, no. 8, pp. 932-40, Aug 2007.
K. A. Davies, H. Ashwin, C. M. Longshaw, D. A. Burns, G. L. Davis, and M. H. Wilcox,
"Diversity of Clostridium difficile PCR ribotypes in Europe: results from the European,
multicentre, prospective, biannual, point-prevalence study of Clostridium difficile infection in
hospitalised patients with diarrhoea (EUCLID), 2012 and 2013," (in eng), Euro Surveill, vol.
21, no. 29, Jul 21 2016.
F. C. Lessa et al., "Burden of Clostridium difficile infection in the United States," (in eng), N
Engl J Med, vol. 372, no. 9, pp. 825-34, Feb 26 2015.
C. L. Costa et al., "A MLST Clade 2 Clostridium difficile strain with a variant TcdB induces
severe inflammatory and oxidative response associated with mucosal disruption," (in eng),
Anaerobe, vol. 40, pp. 76-84, Aug 2016.
S. K. Lim et al., "Emergence of a ribotype 244 strain of Clostridium difficile associated with
severe disease and related to the epidemic ribotype 027 strain," (in eng), Clin Infect Dis, vol.
58, no. 12, pp. 1723-30, Jun 2014.
M. C. Wehrhahn et al., "A series of three cases of severe Clostridium difficile infection in
Australia associated with a binary toxin producing clade 2 ribotype 251 strain," (in eng),
Anaerobe, vol. 55, pp. 117-123, Feb 2019.
C. Quesada-Gomez et al., "Analysis of TcdB Proteins within the Hypervirulent Clade 2
Reveals an Impact of RhoA Glucosylation on Clostridium difficile Proinflammatory
Activities," (in eng), Infect Immun, vol. 84, no. 3, pp. 856-65, Jan 11 2016.
J. K. Shim, S. Johnson, M. H. Samore, D. Z. Bliss, and D. N. Gerding, "Primary symptomless
colonisation by Clostridium difficile and decreased risk of subsequent diarrhoea," (in eng),
Lancet, vol. 351, no. 9103, pp. 633-6, Feb 28 1998.
D. N. Gerding et al., "Administration of spores of nontoxigenic Clostridium difficile strain
M3 for prevention of recurrent C. difficile infection: a randomized clinical trial," (in eng),
Jama, vol. 313, no. 17, pp. 1719-27, May 5 2015.
K. J. Nagaro et al., "Nontoxigenic Clostridium difficile protects hamsters against challenge
with historic and epidemic strains of toxigenic BI/NAP1/027 C. difficile," (in eng),
Antimicrob Agents Chemother, vol. 57, no. 11, pp. 5266-70, Nov 2013.
S. P. Sambol, M. M. Merrigan, J. K. Tang, S. Johnson, and D. N. Gerding, "Colonization for
the prevention of Clostridium difficile disease in hamsters," (in eng), J Infect Dis, vol. 186,
no. 12, pp. 1781-9, Dec 15 2002.
S. A. Villano, M. Seiberling, W. Tatarowicz, E. Monnot-Chase, and D. N. Gerding,
"Evaluation of an oral suspension of VP20621, spores of nontoxigenic Clostridium difficile
strain M3, in healthy subjects," (in eng), Antimicrob Agents Chemother, vol. 56, no. 10, pp.
5224-9, Oct 2012.
74
[87]
[88]
[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
Y. B. Chen et al., "Molecular epidemiology of Clostridium difficile in a tertiary hospital of
China," (in eng), J Med Microbiol, vol. 63, no. Pt 4, pp. 562-9, Apr 2014.
M. Kawada et al., "Evaluation of a simultaneous detection kit for the glutamate
dehydrogenase antigen and toxin A/B in feces for diagnosis of Clostridium difficile
infection," (in eng), J Infect Chemother, vol. 17, no. 6, pp. 807-11, Dec 2011.
M. P. Hensgens, A. Goorhuis, O. M. Dekkers, and E. J. Kuijper, "Time interval of increased
risk for Clostridium difficile infection after exposure to antibiotics," (in eng), J Antimicrob
Chemother, vol. 67, no. 3, pp. 742-8, Mar 2012.
V. G. Loo et al., "Host and pathogen factors for Clostridium difficile infection and
colonization," (in eng), N Engl J Med, vol. 365, no. 18, pp. 1693-703, Nov 3 2011.
C. A. Muto et al., "A large outbreak of Clostridium difficile-associated disease with an
unexpected proportion of deaths and colectomies at a teaching hospital following increased
fluoroquinolone use," (in eng), Infect Control Hosp Epidemiol, vol. 26, no. 3, pp. 273-80,
Mar 2005.
K. Rao et al., "Clostridium difficile ribotype 027: relationship to age, detectability of toxins A
or B in stool with rapid testing, severe infection, and mortality," (in eng), Clin Infect Dis, vol.
61, no. 2, pp. 233-41, Jul 15 2015.
R. M. Humphries, D. Z. Uslan, and Z. Rubin, "Performance of Clostridium difficile toxin
enzyme immunoassay and nucleic acid amplification tests stratified by patient disease
severity," (in eng), J Clin Microbiol, vol. 51, no. 3, pp. 869-73, Mar 2013.
C. S. Lau and R. S. Chamberlain, "Probiotics are effective at preventing Clostridium difficileassociated diarrhea: a systematic review and meta-analysis," (in eng), Int J Gen Med, vol. 9,
pp. 27-37, 2016.
N. T. Shen et al., "Timely Use of Probiotics in Hospitalized Adults Prevents Clostridium
difficile Infection: A Systematic Review With Meta-Regression Analysis," (in eng),
Gastroenterology, vol. 152, no. 8, pp. 1889-1900.e9, Jun 2017.
E. Talevich, B. M. Invergo, P. J. Cock, and B. A. Chapman, "Bio.Phylo: a unified toolkit for
processing, analyzing and visualizing phylogenetic trees in Biopython," (in eng), BMC
Bioinformatics, vol. 13, p. 209, Aug 21 2012.
P. J. Cock et al., "Biopython: freely available Python tools for computational molecular
biology and bioinformatics," (in eng), Bioinformatics, vol. 25, no. 11, pp. 1422-3, Jun 1 2009.
S. Guindon, J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel, "New
algorithms and methods to estimate maximum-likelihood phylogenies: assessing the
performance of PhyML 3.0," (in eng), Syst Biol, vol. 59, no. 3, pp. 307-21, May 2010.
F. D. Ciccarelli, T. Doerks, C. von Mering, C. J. Creevey, B. Snel, and P. Bork, "Toward
automatic reconstruction of a highly resolved tree of life," (in eng), Science, vol. 311, no.
5765, pp. 1283-7, Mar 3 2006.
J. Felsenstein, "CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING
THE BOOTSTRAP," (in eng), Evolution, vol. 39, no. 4, pp. 783-791, Jul 1985.
F. Lemoine et al., "Renewing Felsenstein's phylogenetic bootstrap in the era of big data," (in
eng), Nature, vol. 556, no. 7702, pp. 452-456, Apr 2018.
D. M. Hillis and J. J. Bull, "An Empirical Test of Bootstrapping as a Method for Assessing
Confidence in Phylogenetic Analysis," Systematic Biology, vol. 42, no. 2, pp. 182-192, 1993.
R. A. Stabler et al., "Comparative genome and phenotypic analysis of Clostridium difficile
027 strains provides insight into the evolution of a hypervirulent bacterium," (in eng),
Genome Biol, vol. 10, no. 9, p. R102, 2009.
J. Canovas et al., "Cross-Talk between Staphylococcus aureus and Other Staphylococcal
Species via the agr Quorum Sensing System," (in eng), Front Microbiol, vol. 7, p. 1733,
2016.
75
...
論文の公開元へ
