リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

リケラボ 全国の大学リポジトリにある学位論文・教授論文を一括検索するならリケラボ論文検索大学・研究所にある論文を検索できる

大学・研究所にある論文を検索できる 「Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan」の論文概要。リケラボ論文検索は、全国の大学リポジトリにある学位論文・教授論文を一括検索できる論文検索サービスです。

コピーが完了しました

URLをコピーしました

論文の公開元へ論文の公開元へ
書き出し

Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan

Yoshida, Koki Zhang, Ruixuan Garcia, Kimberly G. Endo, Hisashi Gotoh, Yasuhiro Hayashi, Tetsuya Takemura, Masaharu Ogata, Hiroyuki 京都大学 DOI:10.1128/mra.01323-20

2021.01

概要

“Medusaviridae” is a proposed family of large double-stranded DNA (dsDNA) viruses so far represented by a sole virus isolated from a hot spring. In the present study, we report the isolation and genome sequencing of a second member of this family, medusavirus stheno, discovered from a freshwater sample with an Acanthamoeba castellanii coculture.

この論文で使われている画像

参考文献

January 2021 Volume 10 Issue 1 e01323-20

7.

8.

9.

10.

11.

sequence analysis tools APIs in 2019. Nucleic Acids Res 47:W636–W641.

https://doi.org/10.1093/nar/gkz268.

Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Second Int Conf Intell Syst

Mol Biol 2:28–36.

Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K,

Madden TL. 2009. BLAST1: architecture and applications. BMC Bioinformatics 10:421–429. https://doi.org/10.1186/1471-2105-10-421.

Takemura M. 2016. Morphological and taxonomic properties of Tokyovirus, the first Marseilleviridae member isolated from Japan. Microbes Environ 31:442–448. https://doi.org/10.1264/jsme2.ME16107.

Aoki K, Hagiwara R, Akashi M, Sasaki K, Murata K, Ogata H, Takemura M.

2019. Fifteen marseilleviruses newly isolated from three water samples in

Japan reveal local diversity of Marseilleviridae. Front Microbiol 10:1152.

https://doi.org/10.3389/fmicb.2019.01152.

Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C,

Salzberg SL. 2004. Versatile and open software for comparing large

genomes. Genome Biol 5:R12. https://doi.org/10.1186/gb-2004-5-2-r12.

mra.asm.org 3

Downloaded from https://journals.asm.org/journal/mra on 23 June 2022 by 133.3.201.31.

1. Yoshikawa G, Blanc-Mathieu R, Song C, Kayama Y, Mochizuki T,

Murata K, Ogata H, Takemura M. 2019. Medusavirus, a novel large

DNA virus discovered from hot spring water. J Virol 93:1–25. https://

doi.org/10.1128/JVI.02130-18.

2. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for

Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10

.1093/bioinformatics/btu170.

3. Wick RR, Judd LM, Gorrie CL, Holt KE. 2017. Unicycler: resolving bacterial

genome assemblies from short and long sequencing reads. PLoS Comput

Biol 13:e1005595. https://doi.org/10.1371/journal.pcbi.1005595.

4. Wick RR, Schultz MB, Zobel J, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics 31:3350–3352. https://

doi.org/10.1093/bioinformatics/btv383.

5. Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, Hauser LJ. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification.

BMC Bioinformatics 11:119. https://doi.org/10.1186/1471-2105-11-119.

6. Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, Basutkar P,

Tivey ARN, Potter SC, Finn RD, Lopez R. 2019. The EMBL-EBI search and

...

参考文献をもっと見る

全国の大学の
卒論・修論・学位論文

一発検索!

この論文の関連論文を見る